Changeset 440

Timestamp:

May 19, 2010, 4:39:48 PM (14 years ago)

Author:

keesvb

Message:

sorry, forgot to delete an accolade

File:

• trunk/test/integration/gscf/OntologyTests.groovy (modified) (8 diffs)

trunk/test/integration/gscf/OntologyTests.groovy

@@ -35 +35 @@
 
                 def ontology = new Ontology(
-                                name: testOntologyName,
-                                description: testOntologyDescription,
-                                url: testOntologyUrl,
-                                versionNumber: testOntologyVersionNumber,
-                                ncboId: testOntologyNcboId,
-                                ncboVersionedId: testOntologyNcboVersionedId
+                    name: testOntologyName,
+                    description: testOntologyDescription,
+                    url: testOntologyUrl,
+                    versionNumber: testOntologyVersionNumber,
+                    ncboId: testOntologyNcboId,
+                    ncboVersionedId: testOntologyNcboVersionedId
                 );
 
                 // Validate and save ontology
                 assert ontology.validate()
-                assert ontology.save(flush:true)
+                assert ontology.save(flush: true)
         }
 
@@ -55 +55 @@
          * Test if ontology was properly saved
          */
-        void testSave () {
+        void testSave() {
 
                 // Try to retrieve the ontology and make sure it's the same
@@ -70 +70 @@
 
         /**
-        * Test saving and retrieving a term within the ontology and test giveTermByName(name) and giveTerms()
-        */
+         * Test saving and retrieving a term within the ontology and test giveTermByName(name) and giveTerms()
+         */
         void testTermSave() {
 
@@ -80 +80 @@
                 // Create a new term
                 def term = new Term(
-                        name: testTermName,
-                        accession: testAccession,
-                        ontology: testOntology
+                    name: testTermName,
+                    accession: testAccession,
+                    ontology: testOntology
                 )
 
                 assert term.validate()
-                assert term.save(flush:true)
+                assert term.save(flush: true)
 
                 // Try to retrieve the term from the ontology and make sure it's the same
@@ -102 +102 @@
 
         /**
-        * Ontocat test for debug purposes: show all properties of a certain ontology
-        */
+         * Ontocat test for debug purposes: show all properties of a certain ontology
+         */
         private void testOntocatBioPortalDebug() {
                 // Instantiate OLS service
@@ -114 +114 @@
                 String codingScheme = bean.codingScheme
                 sb.append("OntologyBean:\n")
-                sb.append("property codingScheme="+codingScheme+"\n")
+                sb.append("property codingScheme=" + codingScheme + "\n")
                 sb.append("Bean.properties:\n")
                 bean.properties.each {
-                        sb.append(it.key + "=" + it.value+"\n")
+                        sb.append(it.key + "=" + it.value + "\n")
                 }
                 sb.append "Bean:\t" + bean.dump()
@@ -130 +130 @@
                 sb.append("Ontology meta properties:\n")
                 o.getVersionNumber() + o.getMetaPropertyValues().each {
-                        sb.append(it.name + "=" + it.value+"\n")
+                        sb.append(it.name + "=" + it.value + "\n")
                 }
                 sb.append("Ontology properties:\n");
                 o.getProperties().each {
-                        sb.append(it.key + "=" + it.value+"\n")
+                        sb.append(it.key + "=" + it.value + "\n")
                 }
                 sb.append("Ontology root terms:\n");
@@ -179 +179 @@
                         // Instantiate ontology
                         def ontology = new Ontology(
-                                        name: o.label,
-                                        description: o.description,
-                                        url: bean.properties['homepage'],
-                                        //url: 'http://bioportal.bioontology.org/ontologies/' + versionedId,
-                                        versionNumber: o.versionNumber,
-                                        ncboId: o.ontologyAccession,
-                                        ncboVersionedId: versionedId
+                            name: o.label,
+                            description: o.description,
+                            url: bean.properties['homepage'],
+                            //url: 'http://bioportal.bioontology.org/ontologies/' + versionedId,
+                            versionNumber: o.versionNumber,
+                            ncboId: o.ontologyAccession,
+                            ncboVersionedId: versionedId
                         );
 
                         // Validate and save ontology
                         assert ontology.validate()
-                        assert ontology.save(flush:true)
+                        assert ontology.save(flush: true)
 
                         //println ontology.dump()
-                        }
                 }
         }