Changeset 394

Timestamp:

May 4, 2010, 5:45:23 PM (14 years ago)

Author:

keesvb

Message:

added ontology specifications to Subject species and Sample material domain fields

Location:

trunk/grails-app

Files:

• conf/BootStrap.groovy (modified) (1 diff)
• domain/dbnp/studycapturing/Sample.groovy (modified) (2 diffs)
• domain/dbnp/studycapturing/Subject.groovy (modified) (2 diffs)

trunk/grails-app/conf/BootStrap.groovy

@@ -32 +32 @@
                                 ncboId: '1132',
                                 ncboVersionedId: '38802'
+                        ).with { if (!validate()) { errors.each { println it} } else save()}
+
+                        println ".adding BRENDA source material ontology"
+                        def brendaOntology = new Ontology(
+                                name: 'BRENDA tissue / enzyme source',
+                                description: 'A structured controlled vocabulary for the source of an enzyme. It comprises terms for tissues, cell lines, cell types and cell cultures from uni- and multicellular organisms.',
+                                url: 'http://www.brenda-enzymes.info',
+                                versionNumber: '1.3',
+                                ncboId: '1005',
+                                ncboVersionedId: '40643'
                         ).with { if (!validate()) { errors.each { println it} } else save()}
 

trunk/grails-app/domain/dbnp/studycapturing/Sample.groovy

@@ -2 +2 @@
 
 import dbnp.data.Term
+import dbnp.data.Ontology
 
 /**
@@ -22 +23 @@
                         new TemplateField(
                             name: 'material',
-                            type: TemplateFieldType.ONTOLOGYTERM) ];
+                            type: TemplateFieldType.ONTOLOGYTERM,
+                            ontologies: [Ontology.findByNcboId(1005)])
+                ];
         }
 

trunk/grails-app/domain/dbnp/studycapturing/Subject.groovy

@@ -2 +2 @@
 
 import dbnp.data.Term
+import dbnp.data.Ontology
 
 /**
@@ -22 +23 @@
                         new TemplateField(
                             name: 'species',
-                            type: TemplateFieldType.ONTOLOGYTERM) ];
+                            type: TemplateFieldType.ONTOLOGYTERM,
+                            ontologies: [Ontology.findByNcboId(1132)]) ];
         }
 }