Changeset 353 for trunk/grails-app/conf

Timestamp:

Apr 20, 2010, 10:49:54 AM (13 years ago)

Author:

duh

Message:

• refactored termField tag
• refactored subjects page
• added terms and ontologies to bootstrap

File:

• trunk/grails-app/conf/BootStrap.groovy (modified) (1 diff)

trunk/grails-app/conf/BootStrap.groovy

@@ -92 +92 @@
                         .with { if (!validate()) { errors.each { println it} } else save()}
 
+                        // add NCBI species ontology
+                        println ".adding NCBI species ontology"
+                        def speciesOntology = new Ontology(
+                                name: 'NCBI organismal classification',
+                                description: 'A taxonomic classification of living organisms and associated artifacts for their controlled description within the context of databases.',
+                                url: 'http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/',
+                                versionNumber: '1.2',
+                                ncboId: '1132',
+                                ncboVersionedId: '38802'
+                        ).with { if (!validate()) { errors.each { println it} } else save()}
+
+                        // add TERMS
+                        println ".adding mouse term"
+                        def mouseTerm = new Term(
+                                name: 'Mus musculus',
+                                ontology: speciesOntology,
+                                accession: '10090'
+                        ).with { if (!validate()) { errors.each { println it} } else save()}
+                        println ".adding human term"
+                        def humanTerm = new Term(
+                                name: 'Homo sapiens',
+                                ontology: speciesOntology,
+                                accession: '9606'
+                        ).with { if (!validate()) { errors.each { println it} } else save()}