Changeset 187 for trunk/src

Timestamp:

Feb 10, 2010, 4:09:52 PM (12 years ago)

Author:

keesvb

Message:

changed definition of clean data layer, implemented it for the clinical data module, added demonstration to the sandbox

File:

• trunk/src/java/dbnp/data/CleanDataLayer.java (modified) (1 diff)

trunk/src/java/dbnp/data/CleanDataLayer.java

@@ -8 +8 @@
 public interface CleanDataLayer {
 
-        public String getAssayDescription(long assayID);
-        public String[] getFeatureNames(long assayID);
-        public Map getFeatureData(long assayID, long[] sampleIDs);
-        public Map getFeatureDataDifferential(long assayID, long[] sampleIDs1, long[] sampleIDs2);
+        /**
+         * Get the names of all quantitative features that are available for a certain assay
+         * @param assayID the module internal ID for the assay
+         * @return
+         */
+        public String[] getFeaturesQuantitative(long assayID);
+
+        /**
+         * Get the data for a quantitative feature for a certain assay for a certain set of samples
+         * @param feature
+         * @param assayID
+         * @param sampleIDs
+         * @return
+         */
+        public Map getDataQuantitative(String feature, long assayID, String[] sampleIDs);
 
 }