Changeset 187 for trunk/grails-app/services

Timestamp:

Feb 10, 2010, 4:09:52 PM (13 years ago)

Author:

keesvb

Message:

changed definition of clean data layer, implemented it for the clinical data module, added demonstration to the sandbox

File:

• trunk/grails-app/services/dbnp/clinicaldata/ClinicalDataLayerService.groovy (modified) (1 diff)

trunk/grails-app/services/dbnp/clinicaldata/ClinicalDataLayerService.groovy

@@ -5 +5 @@
         boolean transactional = false
 
-        String getAssayDescription(long assayID) {
-                return "";
+        Map getDataQuantitative(String feature, long assayID, String[] sampleIDs) {
+                def measurement = ClinicalMeasurement.findByName(feature)
+                if (!measurement) throw new NoSuchFieldException("Feature ${feature} not found")
+                measurement.getValues(assayID,sampleIDs)
         }
 
-        String[] getFeatureNames(long assayID) {
-                return new String[0];
-        }
-
-        Map getFeatureData(long assayID, long[] sampleIDs) {
-                return null;
-        }
-
-        Map getFeatureDataDifferential(long assayID, long[] sampleIDs1, long[] sampleIDs2) {
-                return null;
+        String[] getFeaturesQuantitative(long assayID) {
+                return ClinicalAssayInstance.get(assayID).assay.measurements*.name;
         }
 }