Changeset 187 for trunk/grails-app/domain/dbnp/clinicaldata/ClinicalMeasurement.groovy

Timestamp:

Feb 10, 2010, 4:09:52 PM (12 years ago)

Author:

keesvb

Message:

changed definition of clean data layer, implemented it for the clinical data module, added demonstration to the sandbox

File:

• trunk/grails-app/domain/dbnp/clinicaldata/ClinicalMeasurement.groovy (modified) (2 diffs)

trunk/grails-app/domain/dbnp/clinicaldata/ClinicalMeasurement.groovy

@@ -1 +1 @@
 package dbnp.clinicaldata
+
+import dbnp.data.FeatureType
 
 class ClinicalMeasurement
  extends dbnp.data.FeatureBase {
 
-        ClinicalMeasurementType type
+        // For now, let's assume that quantitative values are stored as float,
+        // and qualitative values as string
+        // We can always add an additional ClinicalMeasurementType datatype (FLOAT, INTEGER etc.) later (as was here until rev 186)
+
         String referenceValues
         float detectableLimit
@@ -13 +18 @@
 
         static constraints = {
+                name(unique:true)
                 referenceValues(nullable: true, blank: true)
                 detectableLimit(nullable: true)
                 correctionMethod(nullable: true, blank: true)
         }
+
+        Map getValues(long assayID, String[] sampleIDs) {
+                FeatureType featureType = type
+                switch(featureType) {
+                        case FeatureType.QUANTITATIVE:
+                                def values = ClinicalFloatData.withCriteria {
+                                        assay { eq("id",assayID) }
+                                        eq("measurement",this)
+                                        'in'("sample",sampleIDs)
+                                }
+                                def result = new HashMap<String,Float>();
+                                values.each {
+                                        result.put(it.sample,it.value)
+                                }
+                                return result
+                        default:
+                                throw new NoSuchFieldException("Feature type ${featureType} not supported")
+                }
+        }
 }