Changeset 1425 for trunk/test

Timestamp:

Jan 21, 2011, 4:37:54 PM (10 years ago)

Author:

s.h.sikkema@…

Message:

Rudimentary assay export functionality

File:

• trunk/test/unit/dbnp/studycapturing/AssayControllerTests.groovy (modified) (4 diffs)

trunk/test/unit/dbnp/studycapturing/AssayControllerTests.groovy

@@ -3 +3 @@
 import grails.test.*
 
-import dbnp.data.Term
-
 /**
  * AssayControllerTests Test
  *
- * Description of my test
- *
  * @author  your email (+name?)
- * @since       2010mmdd
- * @package     ???
+ * @since       20101208
+ * @package     dbnp.studycapturing
  *
  * Revision information:
@@ -22 +18 @@
     protected void setUp() {
         super.setUp()
-
-        mockDomain(Term,          [ new Term(id: 1, name: 'Human')])
-
-        mockDomain(TemplateField, [ new TemplateField(id: 1, name: 'tf1', type: TemplateFieldType.STRING),
-                                    new TemplateField(id: 2, name: 'tf2', type: TemplateFieldType.STRING),
-                                    new TemplateField(id: 3, name: 'tf3', type: TemplateFieldType.STRING)])
-
-        mockDomain(Template,      [ new Template(id: 1, fields: [TemplateField.get(1), TemplateField.get(2)]),
-                                    new Template(id: 2, fields: [TemplateField.get(3)])])
-
-        mockDomain(Subject,       [ new Subject(id: 1, name:'subject1', template: Template.get(1), species: Term.get(1)),
-                                    new Subject(id: 2, name:'subject2', template: Template.get(2), species: Term.get(1))])
-
-        mockDomain(SamplingEvent, [ new SamplingEvent(id:1, startTime: 2, duration: 5, sampleTemplate: new Template())])
-
-        mockDomain(Event,         [ new Event(id: 1, startTime: 6, endTime: 7)])//, new Event(id: 2, startTime: 8, endTime: 9)])
-
-        mockDomain(EventGroup,    [ new EventGroup(id:1, events: [Event.get(1)]) ])
-
-        mockDomain(Sample,        [ new Sample(id: 1, name:'sample1', parentSubject: Subject.get(1), parentEvent: SamplingEvent.get(1), parentEventGroup: EventGroup.get(1)),
-                                    new Sample(id: 2, name:'sample2', parentSubject: Subject.get(2), parentEvent: SamplingEvent.get(1))])
-
-        mockDomain(Assay,         [ new Assay(id: 1, samples:[Sample.get(1),Sample.get(2)]),
-                                    new Assay(id: 2, samples:[])])
-
-        Subject.get(1).setFieldValue('tf1', 'tfv1')
-        Subject.get(1).setFieldValue('tf2', 'tfv2')
-        Subject.get(2).setFieldValue('tf3', 'tfv3')
     }
 
@@ -57 +25 @@
 
     void testWrongAssayID() {
-        mockParams.id = 3
+        mockParams.assayId = 1
 
         controller.exportAssayAsExcel()
@@ -66 +34 @@
 
     void testExceptionHandling() {
-        mockParams.id = 1
-
-        controller.assayService = [exportAssayDataAsExcelFile:{throw new Exception('msg')}]
+        controller.assayService = [
+                collectAssayData:{a, b -> throw new Exception('msg1')},
+                exportColumnWiseDataToExcelFile:{a, b -> throw new Exception('msg2')}
+        ]
         controller.exportAssayAsExcel()
 
         assertEquals 'Redirected action should match', [action: 'selectAssay'], redirectArgs
-        assertEquals 'Error message', 'msg', mockFlash.errorMessage
+        assertEquals 'Error message', 'java.lang.Exception: msg1', mockFlash.errorMessage
+
+        controller.assayService.collectAssayData = {a, b -> true}
+        controller.exportAssayAsExcel()
+
+        assertEquals 'Redirected action should match', [action: 'selectAssay'], redirectArgs
+        assertEquals 'Error message', 'java.lang.Exception: msg2', mockFlash.errorMessage
+
     }
 
-    void testEmptySampleList() {
-        mockParams.id = 2
-
-        def passedAssayData = []
-
-        controller.assayService = [exportAssayDataAsExcelFile:{a -> passedAssayData = a}]
-        controller.exportAssayAsExcel()
-
-        assertEquals 'Assay data', [], passedAssayData*.value.flatten()
-    }
-
-    void testTemplateFieldsAreCollected() {
-
-        mockParams.id = 1
-
-        Map passedAssayData
-
-        controller.assayService = [exportAssayDataAsExcelFile:{a -> passedAssayData = a}]
-        controller.exportAssayAsExcel()
-
-        def sample1index = passedAssayData.'Sample Data'.'name'.findIndexOf{it == 'sample1'}
-        def sample2index = passedAssayData.'Sample Data'.'name'.findIndexOf{it == 'sample2'}
-
-        assertEquals 'Subject template field', ['tfv1',''], passedAssayData.'Subject Data'.tf1[sample1index, sample2index]
-        assertEquals 'Subject template field', ['tfv2',''], passedAssayData.'Subject Data'.tf2[sample1index, sample2index]
-        assertEquals 'Subject template field', ['','tfv3'], passedAssayData.'Subject Data'.tf3[sample1index, sample2index]
-        assertEquals 'Subject species template field', ['Human', 'Human'], passedAssayData.'Subject Data'.species*.toString()
-        assertEquals 'Subject name template field', ['subject1','subject2'], passedAssayData.'Subject Data'.name[sample1index, sample2index]
-
-        assertEquals 'Sampling event template fields', [2], passedAssayData.'Sampling Event Data'.startTime
-        assertEquals 'Sampling event template fields', [5], passedAssayData.'Sampling Event Data'.duration
-        assertEquals 'Sampling event template fields', '[null]', passedAssayData.'Sampling Event Data'.sampleTemplate.toString()
-        assertEquals 'Event template fields', [6], passedAssayData.'Event Data'.startTime
-        assertEquals 'Event template fields', [7], passedAssayData.'Event Data'.endTime
-        assertEquals 'Sample template fields', ['sample1', 'sample2'], passedAssayData.'Sample Data'.name[sample1index, sample2index]
-    }
 }