Changeset 136 for trunk/grails-app/conf

Timestamp:

Jan 26, 2010, 10:48:51 AM (14 years ago)

Author:

keesvb

Message:

added start of NuGO PPS3 to BootStrap?

File:

• trunk/grails-app/conf/BootStrap.groovy (modified) (2 diffs)

trunk/grails-app/conf/BootStrap.groovy

@@ -24 +24 @@
                         // ontologies
                         def speciesOntology = new Ontology(
-                                name: 'Species',
-                                shortName: 'Species',
+                                name: 'NCBI Taxonomy',
+                                shortName: 'Taxon',
                                 url: 'http://www.obofoundry.org/cgi-bin/detail.cgi?id=ncbi_taxonomy'
                         ).save()
@@ -51 +51 @@
                         */
 
-                        // define template fields
-                        def genotypeTemplateField = new TemplateSubjectField(
-                                name: 'Genotype',
-                                type: TemplateFieldType.STRINGLIST
-                        ).save()
-
                         // Mouse template
                         def mouseTemplate = new Template(
                                 name: 'Mouse'
-                        ).addToSubjectFields(genotypeTemplateField).save()
+                        ).addToSubjectFields(new TemplateSubjectField(
+                                name: 'Genotype',type: TemplateFieldType.STRINGLIST))
+                        .addToSubjectFields(new TemplateSubjectField(
+                                name: 'Age',type: TemplateFieldType.NUMBER)
+                        ).save()
 
                         // studies
-                        new Study(title:"test",code:"code",researchQuestion:"Rquestion",description:"description",ecCode:"ecCode",dateCreated:new Date(),lastUpdated:new Date(),startDate:new Date()).save()
+                        def exampleStudy = new Study(
+                                title:"NuGO PPS3 mouse study leptin module",
+                                code:"PPS3_leptin_module",
+                                researchQuestion:"Leptin etc.",
+                                description:"C57Bl/6 mice were fed a high fat (45 en%) or low fat (10 en%) diet after a four week run-in on low fat diet. After 1 week 10 mice that received a low fat diet were given an IP leptin challenge and 10 mice of the low-fat group received placebo injections. The same procedure was performed with mice that were fed the high-fat diet. After 4 weeks the procedure was repeated. In total 80 mice were culled.",
+                                ecCode:"2007117.c",
+                                startDate: Date.parse('yyyy-MM-dd','2007-12-11'))
+                        def x=1
+                        12.times {
+                                exampleStudy.addToSubjects(new Subject(
+                                        name: "A" + x++,
+                                        species: mouseTerm,
+                                        templateStringFields: ["Genotype" : "C57/Bl6j"],
+                                        templateNumberFields: ["Age" : 17F]
+                                ))}
+                        exampleStudy.save()
+
                         new Study(title:"example",code:"Excode",researchQuestion:"ExRquestion",description:"Exdescription",ecCode:"ExecCode",dateCreated:new Date(),lastUpdated:new Date(),startDate:new Date()).save()
                         new Study(title:"testAgain",code:"testcode",researchQuestion:"testRquestion",description:"testdescription",ecCode:"testCode",dateCreated:new Date(),lastUpdated:new Date(),startDate:new Date()).save()