Changeset 1110 for trunk/grails-app/conf
- Timestamp:
- Nov 9, 2010, 6:53:25 PM (10 years ago)
- File:
-
- 1 edited
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trunk/grails-app/conf/BootStrapTemplates.groovy
r1046 r1110 20 20 */ 21 21 public static void initTemplateOntologies() { 22 23 // add Subject>species ontology 24 println ".adding NCBI species ontology" 25 def speciesOntology = new Ontology( 26 name: 'NCBI organismal classification', 27 description: 'A taxonomic classification of living organisms and associated artifacts for their controlled description within the context of databases.', 28 url: 'http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/', 29 versionNumber: '1.2', 30 ncboId: '1132', 31 ncboVersionedId: '38802' 32 ).with { if (!validate()) { errors.each { println it} } else save()} 33 34 // add Sample>material ontology 35 println ".adding BRENDA source material ontology" 36 def brendaOntology = new Ontology( 37 name: 'BRENDA tissue / enzyme source', 38 description: 'A structured controlled vocabulary for the source of an enzyme. It comprises terms for tissues, cell lines, cell types and cell cultures from uni- and multicellular organisms.', 39 url: 'http://www.brenda-enzymes.info', 40 versionNumber: '1.3', 41 ncboId: '1005', 42 ncboVersionedId: '40643' 43 ).with { if (!validate()) { errors.each { println it} } else save()} 44 45 // add NCI ontology which is used in Mouse genotype template field 46 def nciOntology = new Ontology( 47 name: 'NCI Thesaurus', 48 description: 'A vocabulary for clinical care, translational and basic research, and public information and administrative activities.', 49 url: 'http://ncicb.nci.nih.gov/core/EVS', 50 versionNumber: '10.01', 51 ncboId: '1032', 52 ncboVersionedId: '42693' 53 ).with { if (!validate()) { errors.each { println it} } else save()} 54 55 // add CHEBI ontology which is used in Mouse genotype template field 56 def chebiOntology = new Ontology( 57 name: 'Chemical entities of biological interest', 58 description: 'A structured classification of chemical compounds of biological relevance.', 59 url: 'http://www.ebi.ac.uk/chebi', 60 versionNumber: '1.68', 61 ncboId: '1007', 62 ncboVersionedId: '42878' 63 ).with { if (!validate()) { errors.each { println it} } else save()} 64 22 def speciesOntology = Ontology.getOrCreateOntologyByNcboId(1132) 23 def brendaOntology = Ontology.getOrCreateOntologyByNcboId(1005) 24 def nciOntology = Ontology.getOrCreateOntologyByNcboId(1032) 25 def chebiOntology = Ontology.getOrCreateOntologyByNcboId(1007) 65 26 } 66 27
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