1 | package gscf |
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2 | |
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3 | import grails.test.* |
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4 | import dbnp.studycapturing.* |
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5 | import dbnp.data.* |
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6 | |
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7 | /** |
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8 | * SubjectTests Test |
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9 | * |
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10 | * Test the creation of a Subject and its TemplateEntity functionality on data model level |
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11 | * |
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12 | * @author keesvb |
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13 | * @since 20100510 |
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14 | * @package dbnp.studycapturing |
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15 | * |
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16 | * Revision information: |
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17 | * $Rev$ |
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18 | * $Author$ |
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19 | * $Date$ |
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20 | */ |
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21 | class SubjectTests extends GrailsUnitTestCase { |
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22 | |
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23 | final String testSubjectName = "Test subject" |
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24 | final String testSubjectBMITemplateFieldName = "BMI" |
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25 | final double testSubjectBMI = 25.32 |
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26 | |
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27 | protected void setUp() { |
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28 | super.setUp() |
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29 | } |
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30 | |
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31 | protected void tearDown() { |
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32 | super.tearDown() |
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33 | } |
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34 | |
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35 | /** |
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36 | * Test creation and saving of a new human subject, |
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37 | * by finding the appropriate template as should be defined in the Bootstrap, |
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38 | * and finding the appropriate species as should be defined in the Bootstrap and giveDomainFields |
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39 | * |
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40 | */ |
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41 | void testCreation() { |
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42 | |
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43 | // Look up human template |
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44 | def humanTemplate = Template.findByName('Human') |
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45 | assert humanTemplate |
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46 | |
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47 | def subject = new Subject( |
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48 | name: testSubjectName, |
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49 | template: humanTemplate |
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50 | ) |
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51 | |
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52 | // This subject should not validate as required fields species is missing |
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53 | assert !subject.validate() |
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54 | |
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55 | // Get domain fields and make sure they are name and species |
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56 | def domainFields = subject.giveDomainFields() |
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57 | assert domainFields |
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58 | println domainFields[0] |
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59 | assert domainFields[0].name == 'name' |
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60 | assert domainFields[1].name == 'species' |
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61 | |
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62 | // Get the ontologies from species and make sure this is 1 ontology with NCBO ID 1132 |
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63 | def speciesOntologies = domainFields[1].ontologies |
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64 | assert speciesOntologies.size() == 1 |
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65 | |
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66 | println speciesOntologies.class |
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67 | // Getting the only element in a set is hard in Grails... |
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68 | Ontology speciesOntology = speciesOntologies.asList().first() |
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69 | assert speciesOntology.ncboId == 1132 |
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70 | |
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71 | def speciesTerms = speciesOntology.giveTerms() |
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72 | def humanTerm = speciesTerms.find { it.name == 'Homo sapiens'}// or speciesOntology.giveTermByName('Homo sapiens') |
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73 | assert humanTerm |
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74 | |
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75 | // Assign species, subject should now validate |
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76 | subject.species = humanTerm |
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77 | assert subject.validate() |
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78 | |
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79 | // Assign a template field using setFieldValue: BMI |
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80 | subject.setFieldValue(testSubjectBMITemplateFieldName,testSubjectBMI) |
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81 | |
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82 | // Try to retrieve it using getFieldValue |
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83 | assert subject.getFieldValue(testSubjectBMITemplateFieldName) == testSubjectBMI |
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84 | |
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85 | // Save subject |
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86 | assert subject.save(flush: true) |
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87 | |
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88 | // Try to retrieve the subject and make sure it's the same |
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89 | def subjectDB = Subject.findByName(testSubjectName) |
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90 | assert subjectDB |
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91 | assert subjectDB.name.equals(testSubjectName) |
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92 | assert subjectDB.template.name.equals(humanTemplate.name) |
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93 | assert subjectDB.species.name.equals(humanTerm.name) |
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94 | |
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95 | // Test giveFields |
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96 | def fields = subjectDB.giveFields() |
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97 | def i = 0 |
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98 | assert fields[i++].name == 'name' |
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99 | assert fields[i++].name == 'species' |
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100 | humanTemplate.fields.each { |
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101 | assert fields[i++].name.equals(it.name) |
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102 | } |
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103 | |
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104 | // Test getFieldValue |
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105 | assert subjectDB.getFieldValue('name').equals(testSubjectName) |
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106 | assert subjectDB.getFieldValue('species') == humanTerm |
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107 | assert subjectDB.getFieldValue(testSubjectBMITemplateFieldName) == testSubjectBMI |
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108 | |
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109 | } |
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110 | |
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111 | } |
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