source: trunk/src/groovy/dbnp/rest/common/CommunicationManager.groovy @ 645

package dbnp.rest.common

import grails.converters.JSON
import java.net.URLEncoder
import org.codehaus.groovy.grails.web.json.*

/**  CommunicationManager
 *
 *   @author Jahn
 *
 *   This class manages communication between dbNP modules such as GSCF and SAM.
 *   By communication we mean two ways of exchanging information: (1) via Rest resources, 
 *   and (2) via Grails views that a module can make available to another module.
 *
 *   For Rest communication this class implements a Rest client that fetches data 
 *   from other modules' Rest resources. The Rest implementation transfers data in JSON.
 *
 *   Note: Do not use this class directly to fetch data. Instead use your module's 
 *   rest wrapper methods. Use this module, to create these rest wrapper methods. 
 *   For instance, use dbnp.rest.sam.registerRestWrapperMethodsGSCFtoSAM to register new methods 
 *   for accessing GSCF's Rest service in SAM; your new method shoud then use this class.
 */


class CommunicationManager {

    def        static Encoding      = "UTF-8" 
    def public static SAMServerURL  = "http://localhost:8182/sam"
    def public static GSCFServerURL = "http://localhost:8080/gscf"

     

    /**
     * Get the results of provided by a rest Rest resource.
     *
     * @params String resource The name of the resource, e.g. importer/pages 
     * @params Map params      A Map of parmater names and values., e.g. ['externalAssayID':12]
     * @return String url   
     */
    public static Object getRestResource( RestServerURL, resource, params ) {
                def url = getRestURL( RestServerURL, resource, params )
                return  JSON.parse( url.newReader() )
    }


    /**
     * Convenience method for constructing URLs for SAM that need parameters.
     * Note that parameters are first convereted to strings by calling their toString() method
     * and then Encoded to protect special characters.
     *
     * @params String resource The name of the resource, e.g. importer/pages 
     * @params Map params      A Map of parmater names and values., e.g. ['externalAssayID':12]
     * @return String url   
     */
    public static URL getRestURL( RestServerURL, resource, params ) {
        def url = RestServerURL + '/' + resource
                def first = true
                println "url: " + url
                params.each { name, value ->
                        if(first) {
                                first = false
                                url += '/nil?' + name + "=" + URLEncoder.encode( value.toString(), Encoding )
                        }
                        else { 
                                url += '&' + name + "=" + URLEncoder.encode( value.toString(), Encoding  )
                        }
                }
                return new URL( url )
    }



    /**
     * This method dynamically adds a static method to the CommunicationManager.
     *  
     * @params String serverURL         A rest server URL.
     * @params String restName          The name of a rest resource on the server.      
     * @params Map params               A list of parameter names to be passed to this resource.
     * @return String url   
     *  
     * Given a rest resource at serverURL called resourceName, we register a static method
     * for the CommunicationManager. The new method has the same name and arity as the resource. 
     *  
     * Example: Suppopse http://localhost:8080/gscf/rest/getSamples is a Rest resource.
     *  
     * In our grails app, we would like to connect to this service. We want to have a 
     * method getSamples() that fetches the result from the service. We do this by calling
     *  
     *          CommunicationManager.addRestWrapper( 'http://localhost:8080/gscf/rest', 'getSamples', ['externalStudyID'] ) 
     *  
     * This registers a new method:
     *  
         *               public static Object CommunicationManager.getSamples( Object arg )
     *  
     * This method has arrity 1 and expects to be given a map. The map is the parameter map
     * of the rest service getSamples. It maps parameter called "externalStudyID" to some object 
     * that is passed. So, it can be called like as follows:
     *  
     *      def sampleList = CommunicationManager.getSamples( [externalStudyID:4711] )
     *  
     *  The call will deliver the results of the parameterized rest resource given at:
     *  
     *          http://localhost:8080/gscf/rest/nil?externalStudyID=4711
     * 
     */

    public static addRestWrapper( serverURL, restName, params = [], closure = { return it } ) {
                CommunicationManager.metaClass.registerStaticMethod( restName ) { Object [] strangeGroovyArgs ->
                        def map = [:]
                    def args = strangeGroovyArgs[0]        // groovy nests the parameters of the methods in some other array
                        for( i in 0..(params.size-1) ) {
                                def param = params[i]
                            map[param] = args[i]
                        }
                        return closure( getRestResource( serverURL, restName, map ) )
                }
        }





    /**
     * This method dynamically registers a static method to the CommunicationManager. The new method 
     * gives url for a Grails view on some server and takes as arguments the arguments required
     * as params by the view.
     *  
     * @params String methodname        The name for method to be registered. 
     * @params String serverURL         The server's URL.
     * @params String viewName          The view's name, e.g., '/Assay/show'
     * @params Map params               The parameter list required by this view.
     * @return String URL 
     *  
     */  
    public static addViewWrapper( methodName, serverURL, viewName, params = [] ) {

                CommunicationManager.metaClass.registerStaticMethod( methodName ) { Object [] strangeGroovyArgs ->
                        def map = [:]
                    def args = strangeGroovyArgs[0]        // groovy nests the parameters of the methods in some other array
                        for( i in 0..(params.size-1) ) {
                                def param = params[i]
                            map[param] = args[i]
                        }
                        return getRestURL( serverURL, viewName, map )
                }
    }


    /**
     *  This creates on run time new methods for accessing Rest resources that GSCF provides for SAM.
     *  This method should be called in grails-app/conf/BootStrap.groovy in the SAM module.
     */ 
    public static registerRestWrapperMethodsGSCFtoSAM() {
        def url = GSCFServerURL
                addRestWrapper( url , 'getStudies' )
                addRestWrapper( url , 'getSubjects', ['externalStudyID'] )
                addRestWrapper( url , 'getAssays',   ['externalStudyID'] )
                addRestWrapper( url , 'getSamples',  ['externalAssayID'] )
    }


    /**
     *  This method creates on run time new methods for accessing Grails views that SAM provides for GSCF.
     *  This method should be called in grails-app/conf/BootStrap.groovy in the GSCF module.
     */ 
    public static registerRestWrapperMethodsSAMtoGSCF() {
                def url = SAMServerURL

                // register method that links to the SAM view for importing a SimpleAssay. 
        // parameters: externalAssayID, an externalAssayID 
                addViewWrapper( 'getAssayImportURL', url, 'importer/pages', ['externalAssayID', 'externalStudyID'] )

                // register method that links to the SAM view for showing a SimpleAssay 
        // parameters: externalAssayID
                addViewWrapper( 'getAssayShowURL', url, 'simpleAssay/show', ['externalAssayID'] )

                // register method that links to the SAM view for editing a SimpleAssay 
        // parameters: externalAssayID
                addViewWrapper( 'getAssayEditURL', url, 'simpleAssay/show', ['externalAssayID'] )

                // register method that links to the SAM view for editing a SimpleAssay 
        // parameters: externalAssayID
                addViewWrapper( 'getMeasurementTypesURL', url, 'simpleAssayMeasurementType/list', ['externalStudyID'] )

                // register rest resource that returns the results of a full text query on SAM 
        // parameters:   query. A string for fulltext search on SAM
        // return value: results map. It contains two keys 'studyIds', and 'assays'. 'studyIds' 
                //               key maps to a list of Study domain objects of GSCF. 'assays' map to a
                //               list of pairs. Each pair consists of an Assay domain object of GSCF and
                //               additional assay information from SAM provided as a map.
                // Example of a returned map: 
                //               [studyIds:[PPSH], 
                //                               assays:[[isIntake:false, isDrug:false, correctionMethod:test Correction Method 1, 
                //                               detectableLimit:1, isNew:false, class:data.SimpleAssay, externalAssayID:1, id:1, 
                //                               measurements:null, unit:Insulin, inSerum:false, name:test Simple Assay 1, 
                //                               referenceValues:test Reference Values 1]]]
                def closure = { map -> 
                    def studies = []    
                    def assays  = []    
                        def studiesHQ = "from dbnp.studycapturing.Study as s where s.code=?"
                        map['studyIds'].each { studies.add( dbnp.studycapturing.Study.find(studiesHQ,[it]) ) }
                        map['assays'].each { samAssay ->
                                def assayID = samAssay['externalAssayID']
                            def assayHQ = "from dbnp.studycapturing.Assay as a where a.externalAssayID='${assayID}'"
                                def assay = dbnp.studycapturing.Assay.find(assayHQ)
                                assays.add( [samAssay,assay] )
                        } 
                        return [studies:studies, assays:assays] 
                }

                addRestWrapper( url+'/rest', 'getQueryResult',  ['query'], closure )
                
    }


}