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show.gsp @ 453

Last change on this file since 453 was 453, checked in by roberth, 13 years ago
Improved study list, study detail view and study comparison. Also improved performance issues
Property svn:keywords set to `Date Author Rev`
File size: 20.3 KB

Line
1
2	<%@ page import="dbnp.studycapturing.Study" %>
3	<html>
4	<head>
5	<meta http-equiv="Content-Type" content="text/html; charset=UTF-8" />
6	<meta name="layout" content="main" />
7	<g:set var="entityName" value="${message(code: 'study.label', default: 'Study')}" />
8	<title><g:message code="default.show.label" args="[entityName]" /></title>
9	<script type="text/javascript">
10	$(function() {
11	$("#tabs").tabs();
12	});
13	</script>
14	<link rel="stylesheet" href="${resource(dir: 'css', file: 'studies.css')}"/>
15
16	</head>
17	<body>
18
19	<div class="body" id="studies">
20	<h1><g:message code="default.show.label" args="[entityName]" /></h1>
21	<g:if test="${flash.message}">
22	<div class="message">${flash.message}</div>
23	</g:if>
24	<div class="dialog">
25
26	<div id="tabs">
27	<ul>
28	<li><a href="#study">Study Information</a></li>
29	<li><a href="#subjects">Subjects</a></li>
30	<li><a href="#events">Events</a></li>
31	<li><a href="#event-group">Event Groups</a></li>
32	<li><a href="#assays">Assays</a></li>
33	<li><a href="#persons">Persons</a></li>
34	<li><a href="#publications">Publications</a></li>
35	</ul>
36
37	<div id="study">
38
39	<table>
40	<!-- only show the head section if there are multiple studies -->
41	<g:if test="${studyList.size()>1}">
42	<thead>
43	<tr>
44	<th></th>
45	<g:each in="${studyList}" var="studyInstance">
46	<th>${studyInstance.title}</th>
47	</g:each>
48	</tr>
49	</thead>
50	</g:if>
51	<%
52	// Determine a union of the fields from all studies, in order
53	// to show a proper list. We want every field to appear just once,
54	// so the list is filtered for unique values
55	studyFields = studyList[0].giveDomainFields() + studyList*.giveTemplateFields().flatten().unique()
56	%>
57	<!-- Show all template and domain fields, if filled -->
58	<g:each in="${studyFields}" var="field">
59	<%
60	// If a value is not set for any of the selected studies, the
61	// field should not appear in the list
62	showField = true in studyList.collect { it.fieldExists( field.name ) && it.getFieldValue( field.name ) != null }.flatten()
63	%>
64	<g:if test="${showField}">
65	<tr>
66	<td>${field}</td>
67	<g:each in="${studyList}" var="studyInstance">
68	<td>${studyInstance.getFieldValue(field.name)}</td>
69	</g:each>
70	</tr>
71	</g:if>
72	</g:each>
73
74	<!-- Add some extra fields -->
75	<tr>
76	<td>Events</td>
77	<g:each in="${studyList}" var="studyInstance">
78	<td>
79	<g:if test="${studyInstance.giveEventTemplates().size()==0}">
80	-
81	</g:if>
82	<g:else>
83	${studyInstance.giveEventTemplates().name.join(", ")}
84	</g:else>
85	</td>
86	</g:each>
87	</tr>
88	<tr>
89	<td>Sampling events</td>
90	<g:each in="${studyList}" var="studyInstance">
91	<td>
92	<g:if test="${studyInstance.giveSamplingEventTemplates().size()==0}">
93	-
94	</g:if>
95	<g:else>
96	${studyInstance.giveSamplingEventTemplates().name.join(", ")}
97	</g:else>
98	</td>
99	</g:each>
100	</tr>
101	<tr>
102	<td>Readers</td>
103	<g:each in="${studyList}" var="studyInstance">
104	<td>
105	<g:if test="${studyInstance.readers.size()==0}">
106	-
107	</g:if>
108	<g:else>
109	<g:each in="${studyInstance.readers}" var="r" status="i">
110	<g:if test="${i > 0}">, </g:if>
111	<g:link controller="user" action="show" id="${r.id}">${r?.encodeAsHTML()}</g:link>
112	</g:each>
113	</g:else>
114	</td>
115	</g:each>
116	</tr>
117	<tr>
118	<td>Editors</td>
119	<g:each in="${studyList}" var="studyInstance">
120	<td>
121	<g:if test="${studyInstance.editors.size()==0}">
122	-
123	</g:if>
124	<g:else>
125	<g:each in="${studyInstance.editors}" var="r" status="i">
126	<g:if test="${i > 0}">, </g:if>
127	<g:link controller="user" action="show" id="${r.id}">${r?.encodeAsHTML()}</g:link>
128	</g:each>
129	</g:else>
130	</td>
131	</g:each>
132	</tr>
133
134	</table>
135	</div>
136
137	<div id="subjects">
138
139	<g:if test="${studyList*.subjects.flatten().size()==0}">
140	No subjects in the selected studies
141	</g:if>
142	<g:else>
143	<table>
144	<thead>
145	<tr>
146	<th></th>
147	<g:each in="${new dbnp.studycapturing.Subject().giveDomainFields()}" var="field">
148	<th>${field}</th>
149	</g:each>
150
151	<%
152	// Determine a union of the fields for all different
153	// subjects in all studies. In order to show a proper list.
154	// We want every field to appear just once,
155	// so the list is filtered for unique values
156	subjectTemplates = studyList*.giveSubjectTemplates().flatten().unique()
157	subjectFields = subjectTemplates*.fields.flatten().unique()
158
159	showSubjectFields = subjectFields
160
161	/*
162	* These lines are rewritten because
163	* performance sucked
164	*
165	* // These took about 9 seconds (for 31 subjects and
166	* allSubjects = studyList*.subjects.flatten()
167	*
168	* subjectFields = subjectFields.findAll { subjectField ->
169	* ( true in allSubjects.collect { subject -> subject.fieldExists( subjectField.name ) && subject.getFieldValue( subjectField.name ) != null }.flatten() )
170	* }
171	*/
172
173	// Filter out all fields that are left blank for all subjects
174	allSubjects = studyList*.subjects.flatten()
175
176	showSubjectFields = []
177	subjectFields.each { subjectField ->
178	for( subject in allSubjects )
179	{
180	// If the field is filled for this subject, we have to
181	// show the field and should not check any other
182	// subjects (hence the break)
183	if( subject.fieldExists( subjectField.name ) && subject.getFieldValue( subjectField.name ) ) {
184	showSubjectFields << subjectField;
185	break;
186	}
187	}
188	}
189
190	%>
191
192	<g:each in="${showSubjectFields}" var="field">
193	<th>${field}</th>
194	</g:each>
195
196	</tr>
197	</thead>
198
199	<g:set var="i" value="${1}" />
200
201	<g:each in="${studyList}" var="studyInstance">
202	<%
203	// Sort subjects by name
204	subjects = studyInstance.subjects;
205	sortedSubjects = subjects.sort( { a, b -> a.name <=> b.name } as Comparator )
206	%>
207
208	<g:each in="${sortedSubjects}" var="subject" status="j">
209	<tr class="${(i % 2) == 0 ? 'odd' : 'even'}">
210	<g:if test="${j==0}">
211	<td class="studytitle" rowspan="${sortedSubjects.size()}">
212	${studyInstance.title}
213	</td>
214	</g:if>
215	<g:each in="${subject.giveDomainFields()}" var="field">
216	<td>${subject.getFieldValue(field.name)}</td>
217	</g:each>
218
219	<g:each in="${showSubjectFields}" var="field">
220	<td>
221	<g:if test="${subject.fieldExists(field.name)}">
222	${subject.getFieldValue(field.name)}
223	</g:if>
224	<g:else>
225	N/A
226	</g:else>
227	</td>
228	</g:each>
229
230	</tr>
231	<g:set var="i" value="${i + 1}" />
232	</g:each>
233	</g:each>
234	</table>
235	</g:else>
236	</div>
237
238	<div id="events">
239	<g:if test="${studyList.events.flatten().size()==0 && studyInstance.samplingEvents.flatten().size()==0 }">
240	No events in these studies
241	</g:if>
242	<g:else>
243
244	<table>
245	<thead>
246	<tr>
247	<th></th>
248	<th>Start time</th>
249	<th>Duration</th>
250	<th>Type</th>
251	<th>Sampling event</th>
252	<th>Parameters</th>
253	</tr>
254	</thead>
255
256	<g:set var="i" value="${1}" />
257
258	<g:each in="${studyList}" var="studyInstance">
259	<%
260	// Sort events by starttime and duration
261	events = studyInstance.events + studyInstance.samplingEvents;
262	sortedEvents = events.sort( { a, b ->
263	a.startTime == b.startTime ?
264	a.getDuration().toMilliseconds() <=> b.getDuration().toMilliseconds() :
265	a.startTime <=> b.startTime
266	} as Comparator )
267	%>
268
269	<g:each in="${sortedEvents}" var="event" status="j">
270	<tr class="${(i % 2) == 0 ? 'odd' : 'even'}">
271	<g:if test="${j==0}">
272	<td class="studytitle" rowspan="${sortedEvents.size()}">
273	${studyInstance.title}
274	</td>
275	</g:if>
276	<td>${event.getPrettyDuration(studyInstance.startDate,event.startTime)}</td>
277	<td>${event.getPrettyDuration()}</td>
278	<td>${event.template.name}</td>
279	<td>
280	<g:if test="${event instanceof dbnp.studycapturing.SamplingEvent}">
281	<g:checkBox name="samplingEvent" disabled="${true}" value="${true}"/>
282	</g:if>
283	<g:else>
284	<g:checkBox name="event" disabled="${true}" value="${false}" />
285	</g:else>
286	</td>
287	<td>
288	<g:set var="fieldCounter" value="${1}" />
289	<g:each in="${event.giveTemplateFields()}" var="field">
290	<g:if test="${event.getFieldValue(field.name)}">
291	<g:if test="${fieldCounter > 1}">, </g:if>
292	${field.name} = ${event.getFieldValue( field.name )}
293	<g:set var="fieldCounter" value="${fieldCounter + 1}" />
294	</g:if>
295	</g:each>
296	</td>
297	</tr>
298
299	<g:set var="i" value="${i + 1}" />
300	</g:each>
301	</g:each>
302	</table>
303
304	</g:else>
305	</div>
306
307	<div id="event-group">
308	<g:if test="${studyList*.eventGroups.flatten().size()==0}">
309	No event groups in this study
310	</g:if>
311	<g:else>
312	<%
313	// Determine a union of the event templates for all different
314	// eventgroups in all studies, in order to show a proper list.
315	// We want every field to appear just once,
316	// so the list is filtered for unique values
317	groupTemplates = studyList*.giveAllEventTemplates().flatten().unique()
318	subjectFields = subjectTemplates*.fields.flatten().unique()
319	%>
320	<table>
321	<thead>
322	<tr>
323	<th></th>
324	<th>Name</th>
325	<th colspan="${groupTemplates.size()}">Events</th>
326	<th>Subjects</th>
327	</tr>
328	<tr>
329	<th></th>
330	<th></th>
331	<g:each in="${groupTemplates}" var="eventTemplate">
332	<th>${eventTemplate.name}</th>
333	</g:each>
334	<th></th>
335	</tr>
336	</thead>
337
338	<g:set var="i" value="${1}" />
339
340	<g:each in="${studyList}" var="studyInstance">
341
342	<g:each in="${studyInstance.eventGroups}" var="eventGroup" status="j">
343	<tr class="${(i % 2) == 0 ? 'odd' : 'even'}">
344	<g:if test="${j==0}">
345	<td class="studytitle" rowspan="${studyInstance.eventGroups.size()}">
346	${studyInstance.title}
347	</td>
348	</g:if>
349	<td>${eventGroup.name}</td>
350
351	<g:each in="${groupTemplates}" var="currentEventTemplate">
352	<td>
353	<g:each in="${eventGroup.events}" var="event">
354	<g:if test="${event.template.name==currentEventTemplate.name}">
355
356	<g:set var="fieldCounter" value="${1}" />
357	<g:each in="${event.giveTemplateFields()}" var="field">
358	<g:if test="${event.getFieldValue(field.name)}">
359	<g:if test="${fieldCounter > 1}">, </g:if>
360	${field.name} = ${event.getFieldValue( field.name )}
361	<g:set var="fieldCounter" value="${fieldCounter + 1}" />
362	</g:if>
363	</g:each>
364	</g:if>
365	</g:each>
366	</td>
367	</g:each>
368	<td>
369	<% sortedGroupSubjects = eventGroup.subjects.sort( { a, b -> a.name <=> b.name } as Comparator ) %>
370	${sortedGroupSubjects.name.join( ', ' )}
371	</td>
372	</tr>
373
374	<g:set var="i" value="${i + 1}" />
375	</g:each>
376
377	</g:each>
378
379	</table>
380	</g:else>
381	</div>
382
383	<div id="assays">
384	<g:if test="${studyList*.assays.flatten().size()==0}">
385	No assays in these studies
386	</g:if>
387	<g:else>
388	<table>
389	<thead>
390	<tr>
391	<th></th>
392	<th width="100">Assay Name</th>
393	<th width="100">Module</th>
394	<th>Type</th>
395	<th width="150">Platform</th>
396	<th>Url</th>
397	<th>Samples</th>
398	</tr>
399	</thead>
400	<g:set var="i" value="${1}" />
401
402	<g:each in="${studyList}" var="studyInstance">
403	<g:each in="${studyInstance.assays}" var="assay" status="j">
404	<tr class="${(i % 2) == 0 ? 'odd' : 'even'}">
405	<g:if test="${j==0}">
406	<td class="studytitle" rowspan="${studyInstance.assays.size()}">
407	${studyInstance.title}
408	</td>
409	</g:if>
410	<td>${assay.name}</td>
411	<td>${assay.module.name}</td>
412	<td>${assay.module.type}</td>
413	<td>${assay.module.platform}</td>
414	<td>${assay.module.url}</td>
415	<td>
416	<% sortedAssaySamples = assay.samples.sort( { a, b -> a.name <=> b.name } as Comparator ) %>
417	${sortedAssaySamples.name.join( ', ' )}
418	</td>
419	</tr>
420	<g:set var="i" value="${i + 1}" />
421
422	</g:each>
423	</g:each>
424	</table>
425	</g:else>
426	</div>
427
428	<div id="persons">
429	<%
430	// Determine a list of all persons
431	allPersons = studyList.persons.person.flatten().unique()
432	%>
433	<g:if test="${allPersons.size()==0}">
434	No persons involved in these studies
435	</g:if>
436	<g:else>
437	<table>
438	<tr>
439	<thead>
440	<th>Name</th>
441	<th>Affiliations</th>
442	<th>Phone</th>
443	<th>Email</th>
444	<g:each in="${studyList}" var="studyInstance">
445	<th>${studyInstance.title}</th>
446	</g:each>
447	</thead>
448	</tr>
449	<g:each in="${allPersons}" var="person" status="i">
450	<tr class="${(i % 2) == 0 ? 'odd' : 'even'}">
451	<td>${person.firstName} ${person.prefix} ${person.lastName}</td>
452	<td>
453	${person.affiliations.join(', ')}
454	</td>
455	<td>${person.phone}</td>
456	<td>${person.email}</td>
457	<g:each in="${studyList}" var="studyInstance">
458	<%
459	studyperson = studyInstance.persons.find { it.person == person }
460	%>
461	<td>
462	<g:if test="${studyperson}">
463	${studyperson.role.name}
464	</g:if>
465	</td>
466	</g:each>
467
468	</tr>
469	</g:each>
470	</table>
471	</g:else>
472	</div>
473
474	<div id="publications">
475	<%
476	// Determine a list of all persons
477	allPublications = studyList*.publications.flatten().unique()
478	%>
479	<g:if test="${allPublications.size()==0}">
480	No publications attached to these studies
481	</g:if>
482	<g:else>
483	<table>
484	<tr>
485	<thead>
486	<th>Title</th>
487	<th>Authors</th>
488	<th>Comments</th>
489	<g:each in="${studyList}" var="studyInstance">
490	<th>${studyInstance.title}</th>
491	</g:each>
492	</thead>
493	</tr>
494	<g:each in="${allPublications}" var="publication" status="i">
495	<tr class="${(i % 2) == 0 ? 'odd' : 'even'}">
496	<td>${publication.title}</td>
497	<td>
498	${publication.authorsList}
499	</td>
500	<td>${publication.comments}</td>
501	<g:each in="${studyList}" var="studyInstance">
502	<td>
503	<g:if test="${publication in studyInstance.publications}">
504	x
505	</g:if>
506	</td>
507	</g:each>
508	</tr>
509	</g:each>
510	</table>
511	</g:else>
512	</div>
513
514	</div>
515	</div>
516	<br>
517	<div class="buttons">
518	<g:form>
519	<g:if test="${studyList.size() == 1}">
520	<g:set var="studyInstance" value="${studyList[0]}" />
521	<g:hiddenField name="id" value="${studyInstance?.id}" />
522	<span class="button"><g:actionSubmit class="edit" action="edit" value="${message(code: 'default.button.edit.label', default: 'Edit')}" /></span>
523	<span class="button"><g:actionSubmit class="delete" action="delete" value="${message(code: 'default.button.delete.label', default: 'Delete')}" onclick="return confirm('${message(code: 'default.button.delete.confirm.message', default: 'Are you sure?')}');" /></span>
524	</g:if>
525	<span class="button"><g:link class="backToList" action="list">Back to list</g:link></span>
526	</g:form>
527	</div>
528
529	</div>
530	</body>
531	</html>

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