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list_extended.gsp @ 453

Last change on this file since 453 was 392, checked in by keesvb, 13 years ago
switched back from the fancy 'integrate domain fields as system fields directly into the Template object at the time of creation' method to the plain 'implement getFieldValue, setFieldValue and giveFields to work for both domain and template fields'. NB: this might affect Events, since until now startTime and endTime were moved directly into template! Switch any Event.template.fields to Event.giveFields()
Property svn:keywords set to `Date Author Rev`
File size: 15.6 KB

Line
1	<%@ page import="dbnp.studycapturing.Study" %>
2	<html>
3	<head>
4	<meta http-equiv="Content-Type" content="text/html; charset=UTF-8" />
5	<meta name="layout" content="main" />
6	<g:set var="entityName" value="${message(code: 'study.label', default: 'Study')}" />
7	<title><g:message code="default.list.label" args="[entityName]" /></title>
8
9	<script type="text/javascript">
10	$(function() {
11	$("#tabs").tabs();
12	});
13	</script>
14
15	</head>
16	<body>
17
18	<% studyList = dbnp.studycapturing.Study.list() %>
19	<% def att_list = ['template','startDate','events','samplingEvents','lastUpdated','readers','code','editors','ecCode','researchQuestion','title','description','owner','dateCreated'] %>
20	<% def selectedStudies = [] %>
21	<% def tmpList = [] %>
22
23
24	<div class="nav">
25	<span class="menuButton"><a class="home" href="${createLink(uri: '/')}">Home</a></span>
26	<span class="menuButton"><g:link class="list" action="list"><g:message code="default.list.label" args="[entityName]" /></g:link></span>
27	<span class="menuButton"><g:link class="create" action="create"><g:message code="default.new.label" args="[entityName]" /></g:link></span>
28	</div>
29
30	<div class="body">
31	<h1>Studies Comparison</h1>
32	<g:if test="${flash.message}">
33	<div class="message">${flash.message}</div>
34	</g:if>
35
36	<% params.each{key,values-> %>
37	<% if (values=="on"){ %>
38	<% tmpList.add(key) %>
39	<% } }%>
40
41	<% for (i in studyList) {%>
42	<% if (tmpList.contains(i.getTitle())) { %>
43	<% selectedStudies.add(i) %>
44	<% }} %>
45
46	<%
47	/* Determine all template fields that are available in one or more templates used */
48	def allTemplateFields = []
49	selectedStudies.each { println it.giveFields(); allTemplateFields += it.giveFields() }
50	allTemplateFields = allTemplateFields.unique();
51	%>
52	<g:if test="${selectedStudies.size()>0}">
53
54	<div id="tabs">
55	<ul>
56	<li><a href="#study">Study Information</a></li>
57	<li><a href="#subjects">Subjects</a></li>
58	<li><a href="#events">Events</a></li>
59	<li><a href="#event-group">Event Groups</a></li>
60	<li><a href="#assays">Assays</a></li>
61	<li><a href="#persons">Persons</a></li>
62	</ul>
63
64
65	<div id="study">
66	<br>
67	<table>
68	<tr>
69	<td></td>
70	<g:each in="${selectedStudies}" status="j" var="studyIns">
71	<td width="50%"><b>${studyIns.title}</b></td>
72	</g:each>
73	</tr>
74	<tr>
75	<td><b>Id</b></td>
76	<g:each in="${selectedStudies}" status="k" var="studyIns">
77	<td><g:link action="show" id="${studyIns.id}">
78	${fieldValue(bean: studyIns, field: "id")}</g:link></td>
79	</g:each>
80	</tr>
81	<tr>
82	<td><b>Template</b></td>
83	<g:each in="${selectedStudies}" status="k" var="studyIns">
84	<td><g:link controller="template" action="show" id="${studyIns.template?.id}">
85	${studyInse?.template?.encodeAsHTML()}</g:link></td>
86	</g:each>
87	</tr>
88
89	<tr>
90	<td><b>Title</b></td>
91	<g:each in="${selectedStudies}" status="k" var="studyIns">
92	<td>${fieldValue(bean: studyIns, field: "title")}</td>
93	</g:each>
94	</tr>
95	<tr>
96	<td><b>Start</b></td>
97	<g:each in="${selectedStudies}" status="k" var="studyIns">
98	<td><g:formatDate date="${studyIns?.startDate}" /></td>
99	</g:each>
100	</tr>
101
102	<tr>
103	<td><b>Date Created</b></td>
104	<g:each in="${selectedStudies}" status="k" var="studyIns">
105	<td><g:formatDate date="${studyIns?.dateCreated}" /></td>
106	</g:each>
107	</tr>
108	<tr>
109	<td><b>Last updated</b></td>
110	<g:each in="${selectedStudies}" status="k" var="studyIns">
111	<td><g:formatDate date="${studyIns?.lastUpdated}" /></td>
112	</g:each>
113	</tr>
114
115	<tr>
116	<td><b>Events</b></td>
117	<g:each in="${selectedStudies}" status="k" var="studyIns">
118	<td>
119	<g:if test="${studyIns.giveEventTemplates().size()==0}">
120	-
121	</g:if>
122	<g:else>
123	${studyIns.giveEventTemplates().name}
124	</g:else>
125	</td>
126	</g:each>
127	</tr>
128	<tr>
129	<td><b>Sampling Events</b></td>
130	<g:each in="${selectedStudies}" status="k" var="studyIns">
131	<td>
132	<g:if test="${studyIns.giveSamplingEventTemplates().size()==0}">
133	-
134	</g:if>
135	<g:else>
136	${studyIns.giveSamplingEventTemplates().name}
137	</g:else>
138	</td>
139	</g:each>
140	</tr>
141	<tr>
142	<td><b>Owner</b></td>
143	<g:each in="${selectedStudies}" status="k" var="studyIns">
144	<td>
145	<g:link controller="user" action="show" id="${studyIns?.owner?.id}">${studyIns?.owner?.encodeAsHTML()}</g:link>
146	</td>
147	</g:each>
148	</tr>
149
150	<tr>
151	<td><b>Readers</b></td>
152	<g:each in="${selectedStudies}" status="k" var="studyIns">
153	<td>
154	<g:if test="${studyIns.readers.size()==0}">
155	-
156	</g:if>
157	<g:else>
158	<g:each in="${studyIns.readers}" var="r">
159	<li><g:link controller="user" action="show" id="${r.id}">${r?.encodeAsHTML()}</g:link></li>
160	</g:each>
161	</g:else>
162	</td>
163	</g:each>
164	</tr>
165	<tr>
166	<td><b>Editors</b></td>
167	<g:each in="${selectedStudies}" status="k" var="studyIns">
168	<td>
169	<g:if test="${studyIns.editors.size()==0}">
170	-
171	</g:if>
172	<g:else>
173	<g:each in="${studyIns.editors}" var="r">
174	<li><g:link controller="user" action="show" id="${r.id}">${r?.encodeAsHTML()}</g:link></li>
175	</g:each>
176	</g:else>
177	</td>
178	</g:each>
179	</tr>
180
181	<!-- All template fields -->
182	<g:each in="${allTemplateFields}" var="field">
183	<tr>
184	<td><b>${field.name}</b></td>
185	<g:each in="${selectedStudies}" status="k" var="studyIns">
186	<td>
187	<g:if test="${studyIns.fieldExists(field.name)}">
188	${studyIns.getFieldValue(field.name)}
189	</g:if>
190	<g:else>
191	-
192	</g:else>
193	</td>
194	</g:each>
195	</tr>
196	</g:each>
197
198	</table>
199	</div>
200
201	<div id="subjects">
202
203	<table border="2">
204	<tr>
205	<g:each in="${selectedStudies}" var="study">
206	<td><center><b>${study.title}</b></center></td>
207	</g:each>
208	</tr>
209
210	<tr>
211	<g:each in="${selectedStudies}" var="stud">
212	<td>
213
214
215	<g:each in="${stud.giveSubjectTemplates()}" var="template">
216	<table>
217	<tr>
218	<td><b>Id </b></td>
219	<td><b>Species</b></td>
220	<td><b>Name</b></td>
221	<g:each in="${template.fields}" var="g">
222	<td><b>
223	<g:link controller="templateField" action="show" id="${g.id}">
224	${g}</b></td>
225	</g:link>
226	</g:each>
227	</tr>
228
229	<g:each in="${stud.subjects.findAll { it.template == template}}" var="s">
230	<tr>
231	<td><g:link controller="subject" action="show" id="${s.id}">${s.id}</g:link></td>
232	<td>${s.species}</td>
233	<td>${s.name}</td>
234	<g:each in="${template.fields}" var="g">
235	<td>
236	<% print s.getFieldValue(g.toString()) %>
237	</td>
238	</g:each>
239	</tr>
240	</g:each>
241
242	</table>
243
244	</g:each>
245
246
247
248	</td>
249	</g:each>
250	</tr>
251	</table>
252
253	</div>
254
255	<div id="events">
256	<table border="2">
257	<tr>
258	<g:each in="${selectedStudies}" var="study">
259	<td><center><b>${study.title}</b></center></td>
260	</g:each>
261	</tr>
262
263	<tr>
264	<g:each in="${selectedStudies}" var="study">
265	<td>
266
267	<g:if test="${study.events.size()+study.samplingEvents.size()==0}">
268	No events in this study
269	</g:if>
270	<g:else>
271	<table>
272	<tr>
273	<td><b>Id </b></td>
274	<td><b>Start time</b></td>
275	<td><b>Duration</b></td>
276	<td><b>Type</b></td>
277	<td><b>Sampling event</b></td>
278	<td><b>Parameters</b></td>
279	</tr>
280
281	<g:each in="${study.events + study.samplingEvents}" var="event">
282	<tr>
283	<td><g:link controller="event" action="show" id="${event.id}">${event.id}</g:link></td>
284	<td>${event.getPrettyDuration(study.startDate,event.startTime)}</td>
285	<td>${event.getPrettyDuration()}</td>
286	<td>${event.template.name}</td>
287	<td>
288	<g:if test="${event instanceof dbnp.studycapturing.SamplingEvent}">
289	<g:checkBox name="samplingEvent" disabled="${true}" value="${true}"/>
290	</g:if>
291	<g:else>
292	<g:checkBox name="event" disabled="${true}" value="${false}" />
293	</g:else>
294	</td>
295	<td>
296	<g:set var="fieldCounter" value="${1}" />
297	<g:each in="${event.giveFields()}" var="field">
298	<g:if test="${event.getFieldValue(field.name)}">
299	<g:if test="${fieldCounter > 1}">, </g:if>
300	${field.name} = ${event.getFieldValue( field.name )}
301	<g:set var="fieldCounter" value="${fieldCounter + 1}" />
302	</g:if>
303	</g:each>
304	</td>
305	</tr>
306	</g:each>
307	</table>
308
309	</g:else>
310
311	</td>
312	</g:each>
313	</tr>
314	</table>
315
316	</div>
317
318	<div id="event-group">
319	<table border="2">
320	<tr>
321	<g:each in="${selectedStudies}" var="study">
322	<td><center><b>${study.title}</b></center></td>
323	</g:each>
324	</tr>
325
326	<tr>
327	<g:each in="${selectedStudies}" var="study">
328
329	<g:if test="${study.eventGroups.size()==0}">
330	No event groups in this study
331	</g:if>
332	<g:else>
333	<table>
334	<tr>
335	<td><b>Name</b></td>
336	<td colspan="${study.giveEventTemplates().size()}"><b>Events</b></td>
337	<td><b>Subjects</b></td>
338	</tr>
339	<tr>
340	<td></td>
341	<g:each in="${study.giveEventTemplates()}" var="eventTemplate">
342	<td><b>${eventTemplate.name}</b></td>
343	</g:each>
344	<td></td>
345	</tr>
346	<g:each in="${study.eventGroups}" var="eventGroup">
347	<tr>
348	<td>${eventGroup.name}</td>
349
350	<g:each in="${study.giveEventTemplates()}" var="currentEventTemplate">
351	<td>
352	<g:each in="${eventGroup.events}" var="event">
353	<g:if test="${event.template.name==currentEventTemplate.name}">
354
355	<g:set var="fieldCounter" value="${1}" />
356	<g:each in="${event.giveFields()}" var="field">
357	<g:if test="${event.getFieldValue(field.name)}">
358	<g:if test="${fieldCounter > 1}">, </g:if>
359	${field.name} = ${event.getFieldValue( field.name )}
360	<g:set var="fieldCounter" value="${fieldCounter + 1}" />
361	</g:if>
362	</g:each>
363	</g:if>
364	</g:each>
365	</td>
366	</g:each>
367	<td>${eventGroup.subjects.name.join( ', ' )}</td>
368	</tr>
369	</g:each>
370	</table>
371	</g:else>
372
373	</g:each>
374	</tr>
375	</table>
376	</div>
377
378	<div id="assays">
379	<table border="2">
380	<tr>
381	<g:each in="${selectedStudies}" var="study">
382	<td><center><b>${study.title}</b></center></td>
383	</g:each>
384	</tr>
385	<tr>
386	<g:each in="${selectedStudies}" var="stud">
387	<td>
388	<table>
389	<tr><td>
390	<g:if test="${stud.assays.size()==0}">
391	No assays in this study
392	</g:if>
393	<g:else>
394	<table>
395	<tr>
396
397	<td width="100"><b>Assay Name</b></td>
398	<td width="100"><b>Module</b></td>
399	<td><b>Type</b></td>
400	<td width="150"><b>Platform</b></td>
401	<td><b>Url</b></td>
402	<td><b>Samples</b></td>
403	</tr>
404	<g:each in="${stud.assays}" var="assay">
405	<tr>
406	<td>${assay.name}</td>
407	<td>${assay.module.name}</td>
408	<td>${assay.module.type}</td>
409	<td>${assay.module.platform}</td>
410	<td>${assay.module.url}</td>
411	<td>
412	<g:each in="${assay.samples}" var="assaySample">
413	${assaySample.name}<br>
414	</g:each>
415	</td>
416	</tr>
417	</g:each>
418	</table>
419	</g:else>
420
421
422	</table>
423	</td>
424	</g:each>
425	</tr>
426	</table>
427
428	</div>
429
430
431	<div id="persons">
432	<table border="2">
433	<tr>
434	<g:each in="${selectedStudies}" var="study">
435	<td><center><b>${study.title}</b></center></td>
436	</g:each>
437	</tr>
438	<tr>
439	<g:each in="${selectedStudies}" var="study">
440	<td>
441	<g:if test="${study.persons.size()==0}">
442	No persons involved in this study
443	</g:if>
444	<g:else>
445	<table>
446	<tr>
447
448	<td><b>Name</b></td>
449	<td><b>Affiliations</b></td>
450	<td><b>Role</b></td>
451	<td><b>Phone</b></td>
452	<td><b>Email</b></td>
453	</tr>
454	<g:each in="${study.persons}" var="studyperson">
455	<tr>
456	<td>${studyperson.person.firstName} ${studyperson.person.prefix} ${studyperson.person.lastName}</td>
457	<td>
458	${studyperson.person.affiliations.name.join(', ')}
459	</td>
460	<td>${studyperson.role.name}</td>
461	<td>${studyperson.person.phone}</td>
462	<td>${studyperson.person.email}</td>
463	</tr>
464	</g:each>
465	</table>
466	</g:else>
467	</td>
468	</g:each>
469	</tr>
470	</table>
471
472	</div>
473
474	</div>
475
476	</g:if>
477
478	<g:if test="${selectedStudies.size()==0}">
479	Please select studies to compare.
480	</g:if>
481
482	</div>
483
484
485	</body>
486	</html>

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