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list_extended.gsp @ 269

Last change on this file since 269 was 269, checked in by keesvb, 13 years ago
upgraded to webflow plugin 1.2.1, added templates to BootStrap?, changed some code to get list_extended back up but it's still not working
Property svn:keywords set to `Author Rev Date`
File size: 13.2 KB

Line
1	<%@ page import="dbnp.studycapturing.Study" %>
2	<html>
3	<head>
4	<meta http-equiv="Content-Type" content="text/html; charset=UTF-8" />
5	<meta name="layout" content="main" />
6	<g:set var="entityName" value="${message(code: 'study.label', default: 'Study')}" />
7	<title><g:message code="default.list.label" args="[entityName]" /></title>
8
9	<script type="text/javascript">
10	$(function() {
11	$("#tabs").tabs();
12	});
13	</script>
14
15	</head>
16	<body>
17
18	<% studyList = dbnp.studycapturing.Study.list() %>
19	<% def att_list = ['template','startDate','events','samplingEvents','lastUpdated','readers','code','editors','ecCode','researchQuestion','title','description','owner','dateCreated'] %>
20	<% def selectedStudies = [] %>
21	<% def tmpList = [] %>
22
23	<div class="nav">
24	<span class="menuButton"><a class="home" href="${createLink(uri: '/')}">Home</a></span>
25	<span class="menuButton"><g:link class="list" action="list"><g:message code="default.list.label" args="[entityName]" /></g:link></span>
26	<span class="menuButton"><g:link class="create" action="create"><g:message code="default.new.label" args="[entityName]" /></g:link></span>
27	</div>
28
29	<div class="body">
30	<h1>Studies Comparison</h1>
31	<g:if test="${flash.message}">
32	<div class="message">${flash.message}</div>
33	</g:if>
34
35	<% params.each{key,values-> %>
36	<% if (values=="on"){ %>
37	<% tmpList.add(key) %>
38	<% } }%>
39
40	<% for (i in studyList) {%>
41	<% if (tmpList.contains(i.getTitle())) { %>
42	<% selectedStudies.add(i) %>
43	<% }} %>
44
45	<% if (selectedStudies.size()>0) {%>
46
47
48	<div id="tabs">
49	<ul>
50	<li><a href="#study">Study Information</a></li>
51	<li><a href="#subjects">Subjects</a></li>
52	<li><a href="#groups">Groups</a></li>
53	<li><a href="#protocols">Protocols</a></li>
54	<li><a href="#events">Events</a></li>
55	<li><a href="#event-description">Event Description</a></li>
56	<li><a href="#event-group">Event Groups</a></li>
57	<li><a href="#assays">Assays</a></li>
58	</ul>
59
60
61	<div id="study">
62	<br>
63	<table>
64	<tr>
65	<td></td>
66	<g:each in="${selectedStudies}" status="j" var="studyIns">
67	<td width="50%"><b>${studyIns.title}</b></td>
68	</g:each>
69	</tr>
70	<tr>
71	<td><b>Id</b></td>
72	<g:each in="${selectedStudies}" status="k" var="studyIns">
73	<td><g:link action="show" id="${studyIns.id}">
74	${fieldValue(bean: studyIns, field: "id")}</g:link></td>
75	</g:each>
76	</tr>
77
78	<g:each in="${att_list}" var="att">
79	<tr>
80	<td><b>${att[0].toUpperCase()+att.substring(1)}</b></td>
81	<g:each in="${selectedStudies}" status="k" var="studyIns">
82
83	<g:if test="${att == 'events'}">
84	<td>
85	<% def eventList = [] %>
86	<g:each in="${studyIns.events}" var="s">
87	<% eventList.add(s.eventDescription) %>
88	</g:each>
89	<g:if test="${eventList.size()==0}">
90	-
91	</g:if>
92	<g:else>
93	<% def sampEvent = eventList.get(0).name %>
94	${sampEvent}
95	<g:each in="${eventList}" var="event">
96	<g:if test="${(event.name!=sampEvent)}">
97	${event.name}
98	</g:if>
99	</g:each>
100	</g:else>
101	</td>
102	</g:if>
103
104	<g:elseif test="${att == 'samplingEvents'}">
105	<td>
106	<% def SampeventList = [] %>
107	<g:each in="${studyIns.samplingEvents}" var="s">
108	<% SampeventList.add(s.eventDescription) %>
109	</g:each>
110	<g:if test="${SampeventList.size()==0}">
111	-
112	</g:if>
113	<g:else>
114	<% def samplEvent = SampeventList.get(0).name %>
115	${samplEvent}
116	<g:each in="${SampeventList}" var="samplingEvent">
117	<g:if test="${(samplingEvent.name!=samplEvent)}">
118	${samplingEvent.name}
119	</g:if>
120	</g:each>
121	</g:else>
122	</td>
123	</g:elseif>
124
125	<g:else>
126	<td>${fieldValue(bean: studyIns, field: att)}</td>
127	</g:else>
128	</g:each>
129	</tr>
130	</g:each>
131
132	</table>
133	</div>
134
135	<div id="subjects">
136
137	<table border="2">
138	<tr>
139	<g:each in="${selectedStudies}" var="study">
140	<td><center><b>${study.title}</b></center></td>
141	</g:each>
142	</tr>
143
144	<tr>
145	<g:each in="${selectedStudies}" var="stud">
146	<td>
147
148
149	<g:each in="${stud.giveSubjectTemplates()}" var="template">
150	<table>
151	<tr>
152	<td><b>Id </b></td>
153	<td><b>Species</b></td>
154	<td><b>Name</b></td>
155	<g:each in="${template.fields}" var="g">
156	<td><b>
157	<g:link controller="templateField" action="show" id="${g.id}">
158	${g}</b></td>
159	</g:link>
160	</g:each>
161	</tr>
162
163	<g:each in="${stud.subjects.findAll { it.template == template}}" var="s">
164	<tr>
165	<td><g:link controller="subject" action="show" id="${s.id}">${s.id}</g:link></td>
166	<td>${s.species}</td>
167	<td>${s.name}</td>
168	<g:each in="${template.fields}" var="g">
169	<td>
170	<% print s.getFieldValue(g.toString()) %>
171	</td>
172	</g:each>
173	</tr>
174	</g:each>
175
176	</table>
177
178	</g:each>
179
180
181
182	</td>
183	</g:each>
184	</tr>
185	</table>
186
187	</div>
188
189	<div id="groups">
190	<table border="2">
191	<tr>
192	<g:each in="${selectedStudies}" var="study">
193	<td width="50%"><center><b>${study.title}</b></center></td>
194	</g:each>
195	</tr>
196	<tr>
197	<g:each in="${selectedStudies}" var="study">
198	<td>
199	<g:if test="${study.groups.size()==0}"> No groups in this study </g:if>
200	<g:else><center><b>${study.groups}</b></center></g:else>
201	</td>
202	</g:each>
203	</tr>
204	</table>
205	</div>
206
207	<div id="protocols">
208	<table border="2">
209	<tr>
210	<g:each in="${selectedStudies}" var="study">
211	<td width="50%"><center><b>${study.title}</b></center></td>
212	</g:each>
213	</tr>
214
215	<tr>
216	<g:each in="${selectedStudies}" var="stud">
217	<td>
218	<table>
219	<tr>
220	<td><b>Id </b></td>
221	<td><b>Name</b></td>
222	<td><b>Parameters</b></td>
223	<td><b>Reference</b></td>
224	</tr>
225
226	<% def protocol_list = [] %>
227	<% def tmp_protocol = stud.events.eventDescription.protocol.get(0) %>
228	<% def tmpBis_protocol = stud.samplingEvents.eventDescription.protocol.get(0) %>
229	<% protocol_list.add(tmp_protocol) %>
230	<% protocol_list.add(tmpBis_protocol) %>
231
232	<g:each in="${stud.events.eventDescription.protocol}" var="s">
233	<% if (tmp_protocol!=s) { %>
234	<% protocol_list.add(s) %>
235	<%}%>
236	</g:each>
237
238	<g:each in="${stud.samplingEvents.eventDescription.protocol}" var="s">
239	<% if (tmpBis_protocol!=s) { %>
240	<% protocol_list.add(s) %>
241	<%}%>
242	</g:each>
243
244	<g:each in="${protocol_list}" var="protocol">
245	<tr>
246	<td><g:link controller="protocol" action="show" id="${protocol.id}">${protocol.id}</g:link></td>
247	<td>${protocol.name}</td>
248	<td>
249	<g:each in="${protocol.parameters}" var="p"><ul><li>
250	<g:link controller="protocolParameter" action="show" id="${p.id}">${p.name}</g:link>
251	</li></ul>
252	</g:each>
253	</td>
254	<td>${protocol.reference}</td>
255	</tr>
256	</g:each>
257	</table>
258
259	</td>
260	</g:each>
261	</tr>
262	</table>
263	</div>
264
265	<div id="events">
266	<table border="2">
267	<tr>
268	<g:each in="${selectedStudies}" var="study">
269	<td><center><b>${study.title}</b></center></td>
270	</g:each>
271	</tr>
272
273	<tr>
274	<g:each in="${selectedStudies}" var="stud">
275	<td>
276
277	<table>
278	<tr>
279	<td><b>Event Description</b></td>
280	<td><b>Subject</b></td>
281	<td><b>Start Time</b></td>
282	<td><b>Duration</b></td>
283	<td><b>Sampling Event</b></td>
284	<td><b>Parameters</b></td>
285	</tr>
286
287	<g:each in="${stud.events}" var="e">
288	<tr>
289	<td><g:link controller="event" action="show" id="${e.id}"> ${e.eventDescription.name}</g:link></td>
290	<td>?</td>
291	<td>${e.getPrettyDuration(stud.startDate,e.startTime)}</td>
292	<td>${e.getPrettyDuration()}</td>
293	<td><g:checkBox name="event" disabled="${true}" value="${false}"/></td>
294	<g:each in="${e.eventDescription.protocol.parameters}" var="param">
295	<td>
296	${param.name} : ${param.listEntries}
297	</td>
298	</g:each>
299	</tr>
300	</g:each>
301
302	<g:each in="${stud.samplingEvents}" var="e">
303	<tr>
304	<td><g:link controller="event" action="show" id="${e.id}">${e.eventDescription.name}</g:link></td>
305	<td>?</td>
306	<td>${e.getPrettyDuration(stud.startDate,e.startTime)}</td>
307	<td>${e.getPrettyDuration()}</td>
308	<td><g:checkBox name="samplingEvent" disabled="${true}" value="${true}"/></td>
309
310	<g:each in="${e.eventDescription.protocol.parameters}" var="param">
311	<td>
312	${param.name} : ${param.listEntries}
313	</td>
314	</g:each>
315	</tr>
316	</g:each>
317
318
319	</table>
320	</td>
321	</g:each>
322	</tr>
323	</table>
324
325	</div>
326
327	<div id="event-description">
328	<table border="2">
329	<tr>
330	<g:each in="${selectedStudies}" var="study">
331	<td><center><b>${study.title}</b></center></td>
332	</g:each>
333	</tr>
334	<tr>
335	<g:each in="${selectedStudies}" var="stud">
336	<td>
337	<table>
338	<tr>
339
340	<td><b>Event Name</b></td>
341	<td><b>Parameters </b></td>
342	</tr>
343	<tr>
344	<td><b></b></td>
345	<td><b>Name</b></td>
346	<td><b>Description</b></td>
347	<td><b>Unit</b></td>
348	<td><b>Reference</b></td>
349	<td><b>Options</b></td>
350	<td><b>Type</b></td>
351	</tr>
352	<g:each in="${dbnp.studycapturing.EventDescription.list()}" var="e">
353	<g:if test="${(stud.events.eventDescription.contains(e))}" >
354	<tr>
355	<td>${e.name} </td></tr><tr>
356	<g:each in="${e.protocol.parameters}" var="p">
357	<td></td>
358	<td>${p.name}</td>
359	<td>${p.description}</td>
360	<td>${p.unit}</td>
361	<td>${p.reference}</td>
362	<g:if test="${(p.listEntries.size()==0)}" >
363	<td>-</td>
364	</g:if>
365	<g:else>
366	<td>${p.listEntries}</td>
367	</g:else>
368	<td>${p.type}</td>
369	</tr>
370	</g:each>
371	</g:if>
372	</g:each>
373
374	<g:each in="${dbnp.studycapturing.EventDescription.list()}" var="e">
375	<g:if test="${(stud.samplingEvents.eventDescription.contains(e))}" >
376	<tr>
377	<td>${e.name} </td></tr><tr>
378	<g:each in="${e.protocol.parameters}" var="p">
379	<td></td>
380	<td>${p.name}</td>
381	<td>${p.description}</td>
382	<td>${p.unit}</td>
383	<td>${p.reference}</td>
384	<g:if test="${(p.listEntries.size()==0)}" >
385	<td>-</td>
386	</g:if>
387	<g:else>
388	<td>${p.listEntries}</td>
389	</g:else>
390	<td>${p.type}</td>
391	</tr>
392	</g:each>
393	</g:if>
394	</g:each>
395
396	</table>
397	</td>
398	</g:each>
399	</tr>
400	</table>
401
402	</div>
403
404	<div id="event-group">
405	</div>
406
407	<div id="assays">
408	<table border="2">
409	<tr>
410	<g:each in="${selectedStudies}" var="study">
411	<td><center><b>${study.title}</b></center></td>
412	</g:each>
413	</tr>
414	<tr>
415	<g:each in="${selectedStudies}" var="stud">
416	<td>
417	<table>
418	<tr><td>
419	<g:if test="${stud.assays.size()==0}">
420	No assays in this study
421	</g:if>
422	<g:else>
423	<table>
424	<tr>
425
426	<td width="100"><b>Assay Name</b></td>
427	<td width="100"><b>Module</b></td>
428	<td><b>Type</b></td>
429	<td width="150"><b>Platform</b></td>
430	<td><b>Url</b></td>
431	<td><b>Samples</b></td>
432	</tr>
433	<g:each in="${stud.assays}" var="assay">
434	<tr>
435	<td>${assay.name}</td>
436	<td>${assay.module.name}</td>
437	<td>${assay.module.type}</td>
438	<td>${assay.module.platform}</td>
439	<td>${assay.module.url}</td>
440	<td>
441	<g:each in="${assay.samples}" var="assaySample">
442	${assaySample.name}<br>
443	</g:each>
444	</td>
445	</tr>
446	</g:each>
447	</table>
448	</g:else>
449
450
451	</table>
452	</td>
453	</g:each>
454	</tr>
455	</table>
456
457	</div>
458
459	</div>
460
461	<% } %>
462
463	<% if (selectedStudies.size()==0) {%>
464	Please select studies to compare.
465	<% } %>
466
467	</div>
468
469
470	</body>
471	</html>

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