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list_extended.gsp @ 247

Last change on this file since 247 was 247, checked in by duh, 13 years ago
set keyword expansion
Property svn:keywords set to `Author Rev Date`
File size: 13.2 KB

Line
1
2	<%@ page import="dbnp.studycapturing.Study" %>
3	<html>
4	<head>
5	<meta http-equiv="Content-Type" content="text/html; charset=UTF-8" />
6	<meta name="layout" content="main" />
7	<g:set var="entityName" value="${message(code: 'study.label', default: 'Study')}" />
8	<title><g:message code="default.list.label" args="[entityName]" /></title>
9
10	<my:jqueryui/>
11	<script type="text/javascript">
12	$(function() {
13	$("#tabs").tabs();
14	});
15	</script>
16
17	</head>
18	<body>
19
20	<% studyList = dbnp.studycapturing.Study.list() %>
21	<% def att_list = ['template','startDate','events','samplingEvents','lastUpdated','readers','code','editors','ecCode','researchQuestion','title','description','owner','dateCreated'] %>
22	<% def selectedStudies = [] %>
23	<% def tmpList = [] %>
24
25	<div class="nav">
26	<span class="menuButton"><a class="home" href="${createLink(uri: '/')}">Home</a></span>
27	<span class="menuButton"><g:link class="list" action="list"><g:message code="default.list.label" args="[entityName]" /></g:link></span>
28	<span class="menuButton"><g:link class="create" action="create"><g:message code="default.new.label" args="[entityName]" /></g:link></span>
29	</div>
30
31	<div class="body">
32	<h1>Studies Comparison</h1>
33	<g:if test="${flash.message}">
34	<div class="message">${flash.message}</div>
35	</g:if>
36
37	<% params.each{key,values-> %>
38	<% if (values=="on"){ %>
39	<% tmpList.add(key) %>
40	<% } }%>
41
42	<% for (i in studyList) {%>
43	<% if (tmpList.contains(i.getTitle())) { %>
44	<% selectedStudies.add(i) %>
45	<% }} %>
46
47	<% if (selectedStudies.size()>0) {%>
48
49
50	<div id="tabs">
51	<ul>
52	<li><a href="#study">Study Information</a></li>
53	<li><a href="#subjects">Subjects</a></li>
54	<li><a href="#groups">Groups</a></li>
55	<li><a href="#protocols">Protocols</a></li>
56	<li><a href="#events">Events</a></li>
57	<li><a href="#event-description">Event Description</a></li>
58	<li><a href="#event-group">Event Groups</a></li>
59	<li><a href="#assays">Assays</a></li>
60	</ul>
61
62
63	<div id="study">
64	<br>
65	<table>
66	<tr>
67	<td></td>
68	<g:each in="${selectedStudies}" status="j" var="studyIns">
69	<td width="50%"><b>${studyIns.title}</b></td>
70	</g:each>
71	</tr>
72	<tr>
73	<td><b>Id</b></td>
74	<g:each in="${selectedStudies}" status="k" var="studyIns">
75	<td><g:link action="show" id="${studyIns.id}">
76	${fieldValue(bean: studyIns, field: "id")}</g:link></td>
77	</g:each>
78	</tr>
79
80	<g:each in="${att_list}" var="att">
81	<tr>
82	<td><b>${att[0].toUpperCase()+att.substring(1)}</b></td>
83	<g:each in="${selectedStudies}" status="k" var="studyIns">
84
85	<g:if test="${att == 'events'}">
86	<td>
87	<% def eventList = [] %>
88	<g:each in="${studyIns.events}" var="s">
89	<% eventList.add(s.eventDescription) %>
90	</g:each>
91	<g:if test="${eventList.size()==0}">
92	-
93	</g:if>
94	<g:else>
95	<% def sampEvent = eventList.get(0).name %>
96	${sampEvent}
97	<g:each in="${eventList}" var="event">
98	<g:if test="${(event.name!=sampEvent)}">
99	${event.name}
100	</g:if>
101	</g:each>
102	</g:else>
103	</td>
104	</g:if>
105
106	<g:elseif test="${att == 'samplingEvents'}">
107	<td>
108	<% def SampeventList = [] %>
109	<g:each in="${studyIns.samplingEvents}" var="s">
110	<% SampeventList.add(s.eventDescription) %>
111	</g:each>
112	<g:if test="${SampeventList.size()==0}">
113	-
114	</g:if>
115	<g:else>
116	<% def samplEvent = SampeventList.get(0).name %>
117	${samplEvent}
118	<g:each in="${SampeventList}" var="samplingEvent">
119	<g:if test="${(samplingEvent.name!=samplEvent)}">
120	${samplingEvent.name}
121	</g:if>
122	</g:each>
123	</g:else>
124	</td>
125	</g:elseif>
126
127	<g:else>
128	<td>${fieldValue(bean: studyIns, field: att)}</td>
129	</g:else>
130	</g:each>
131	</tr>
132	</g:each>
133
134	</table>
135	</div>
136
137	<div id="subjects">
138
139	<table border="2">
140	<tr>
141	<g:each in="${selectedStudies}" var="study">
142	<td><center><b>${study.title}</b></center></td>
143	</g:each>
144	</tr>
145
146	<tr>
147	<g:each in="${selectedStudies}" var="stud">
148	<td>
149
150
151	<g:each in="${stud.giveSubjectTemplates()}" var="template">
152	<table>
153	<tr>
154	<td><b>Id </b></td>
155	<td><b>Species</b></td>
156	<td><b>Name</b></td>
157	<g:each in="${template.fields}" var="g">
158	<td><b>
159	<g:link controller="templateField" action="show" id="${g.id}">
160	${g}</b></td>
161	</g:link>
162	</g:each>
163	</tr>
164
165	<g:each in="${stud.subjects.findAll { it.template == template}}" var="s">
166	<tr>
167	<td><g:link controller="subject" action="show" id="${s.id}">${s.id}</g:link></td>
168	<td>${s.species}</td>
169	<td>${s.name}</td>
170	<g:each in="${template.fields}" var="g">
171	<td>
172	<% print s.getFieldValue(g.toString()) %>
173	</td>
174	</g:each>
175	</tr>
176	</g:each>
177
178	</table>
179
180	</g:each>
181
182
183
184	</td>
185	</g:each>
186	</tr>
187	</table>
188
189	</div>
190
191	<div id="groups">
192	<table border="2">
193	<tr>
194	<g:each in="${selectedStudies}" var="study">
195	<td width="50%"><center><b>${study.title}</b></center></td>
196	</g:each>
197	</tr>
198	<tr>
199	<g:each in="${selectedStudies}" var="study">
200	<td>
201	<g:if test="${study.groups.size()==0}"> No groups in this study </g:if>
202	<g:else><center><b>${study.groups}</b></center></g:else>
203	</td>
204	</g:each>
205	</tr>
206	</table>
207	</div>
208
209	<div id="protocols">
210	<table border="2">
211	<tr>
212	<g:each in="${selectedStudies}" var="study">
213	<td width="50%"><center><b>${study.title}</b></center></td>
214	</g:each>
215	</tr>
216
217	<tr>
218	<g:each in="${selectedStudies}" var="stud">
219	<td>
220	<table>
221	<tr>
222	<td><b>Id </b></td>
223	<td><b>Name</b></td>
224	<td><b>Parameters</b></td>
225	<td><b>Reference</b></td>
226	</tr>
227
228	<% def protocol_list = [] %>
229	<% def tmp_protocol = stud.events.eventDescription.protocol.get(0) %>
230	<% def tmpBis_protocol = stud.samplingEvents.eventDescription.protocol.get(0) %>
231	<% protocol_list.add(tmp_protocol) %>
232	<% protocol_list.add(tmpBis_protocol) %>
233
234	<g:each in="${stud.events.eventDescription.protocol}" var="s">
235	<% if (tmp_protocol!=s) { %>
236	<% protocol_list.add(s) %>
237	<%}%>
238	</g:each>
239
240	<g:each in="${stud.samplingEvents.eventDescription.protocol}" var="s">
241	<% if (tmpBis_protocol!=s) { %>
242	<% protocol_list.add(s) %>
243	<%}%>
244	</g:each>
245
246	<g:each in="${protocol_list}" var="protocol">
247	<tr>
248	<td><g:link controller="protocol" action="show" id="${protocol.id}">${protocol.id}</g:link></td>
249	<td>${protocol.name}</td>
250	<td>
251	<g:each in="${protocol.parameters}" var="p"><ul><li>
252	<g:link controller="protocolParameter" action="show" id="${p.id}">${p.name}</g:link>
253	</li></ul>
254	</g:each>
255	</td>
256	<td>${protocol.reference}</td>
257	</tr>
258	</g:each>
259	</table>
260
261	</td>
262	</g:each>
263	</tr>
264	</table>
265	</div>
266
267	<div id="events">
268	<table border="2">
269	<tr>
270	<g:each in="${selectedStudies}" var="study">
271	<td><center><b>${study.title}</b></center></td>
272	</g:each>
273	</tr>
274
275	<tr>
276	<g:each in="${selectedStudies}" var="stud">
277	<td>
278
279	<table>
280	<tr>
281	<td><b>Event Description</b></td>
282	<td><b>Subject</b></td>
283	<td><b>Start Time</b></td>
284	<td><b>Duration</b></td>
285	<td><b>Sampling Event</b></td>
286	<td><b>Parameters</b></td>
287	</tr>
288
289	<g:each in="${stud.events}" var="e">
290	<tr>
291	<td><g:link controller="event" action="show" id="${e.id}"> ${e.eventDescription.name}</g:link></td>
292	<td>${e.subject.id}</td>
293	<td>${e.getPrettyDuration(stud.startDate,e.startTime)}</td>
294	<td>${e.getPrettyDuration()}</td>
295	<td><g:checkBox name="event" disabled="${true}" value="${false}"/></td>
296	<g:each in="${e.eventDescription.protocol.parameters}" var="param">
297	<td>
298	${param.name} : ${param.listEntries}
299	</td>
300	</g:each>
301	</tr>
302	</g:each>
303
304	<g:each in="${stud.samplingEvents}" var="e">
305	<tr>
306	<td><g:link controller="event" action="show" id="${e.id}">${e.eventDescription.name}</g:link></td>
307	<td>${e.subject.id}</td>
308	<td>${e.getPrettyDuration(stud.startDate,e.startTime)}</td>
309	<td>${e.getPrettyDuration()}</td>
310	<td><g:checkBox name="samplingEvent" disabled="${true}" value="${true}"/></td>
311
312	<g:each in="${e.eventDescription.protocol.parameters}" var="param">
313	<td>
314	${param.name} : ${param.listEntries}
315	</td>
316	</g:each>
317	</tr>
318	</g:each>
319
320
321	</table>
322	</td>
323	</g:each>
324	</tr>
325	</table>
326
327	</div>
328
329	<div id="event-description">
330	<table border="2">
331	<tr>
332	<g:each in="${selectedStudies}" var="study">
333	<td><center><b>${study.title}</b></center></td>
334	</g:each>
335	</tr>
336	<tr>
337	<g:each in="${selectedStudies}" var="stud">
338	<td>
339	<table>
340	<tr>
341
342	<td><b>Event Name</b></td>
343	<td><b>Parameters </b></td>
344	</tr>
345	<tr>
346	<td><b></b></td>
347	<td><b>Name</b></td>
348	<td><b>Description</b></td>
349	<td><b>Unit</b></td>
350	<td><b>Reference</b></td>
351	<td><b>Options</b></td>
352	<td><b>Type</b></td>
353	</tr>
354	<g:each in="${dbnp.studycapturing.EventDescription.list()}" var="e">
355	<g:if test="${(stud.events.eventDescription.contains(e))}" >
356	<tr>
357	<td>${e.name} </td></tr><tr>
358	<g:each in="${e.protocol.parameters}" var="p">
359	<td></td>
360	<td>${p.name}</td>
361	<td>${p.description}</td>
362	<td>${p.unit}</td>
363	<td>${p.reference}</td>
364	<g:if test="${(p.listEntries.size()==0)}" >
365	<td>-</td>
366	</g:if>
367	<g:else>
368	<td>${p.listEntries}</td>
369	</g:else>
370	<td>${p.type}</td>
371	</tr>
372	</g:each>
373	</g:if>
374	</g:each>
375
376	<g:each in="${dbnp.studycapturing.EventDescription.list()}" var="e">
377	<g:if test="${(stud.samplingEvents.eventDescription.contains(e))}" >
378	<tr>
379	<td>${e.name} </td></tr><tr>
380	<g:each in="${e.protocol.parameters}" var="p">
381	<td></td>
382	<td>${p.name}</td>
383	<td>${p.description}</td>
384	<td>${p.unit}</td>
385	<td>${p.reference}</td>
386	<g:if test="${(p.listEntries.size()==0)}" >
387	<td>-</td>
388	</g:if>
389	<g:else>
390	<td>${p.listEntries}</td>
391	</g:else>
392	<td>${p.type}</td>
393	</tr>
394	</g:each>
395	</g:if>
396	</g:each>
397
398	</table>
399	</td>
400	</g:each>
401	</tr>
402	</table>
403
404	</div>
405
406	<div id="event-group">
407	</div>
408
409	<div id="assays">
410	<table border="2">
411	<tr>
412	<g:each in="${selectedStudies}" var="study">
413	<td><center><b>${study.title}</b></center></td>
414	</g:each>
415	</tr>
416	<tr>
417	<g:each in="${selectedStudies}" var="stud">
418	<td>
419	<table>
420	<tr><td>
421	<g:if test="${stud.assays.size()==0}">
422	No assays in this study
423	</g:if>
424	<g:else>
425	<table>
426	<tr>
427
428	<td width="100"><b>Assay Name</b></td>
429	<td width="100"><b>Module</b></td>
430	<td><b>Type</b></td>
431	<td width="150"><b>Platform</b></td>
432	<td><b>Url</b></td>
433	<td><b>Samples</b></td>
434	</tr>
435	<g:each in="${stud.assays}" var="assay">
436	<tr>
437	<td>${assay.name}</td>
438	<td>${assay.module.name}</td>
439	<td>${assay.module.type}</td>
440	<td>${assay.module.platform}</td>
441	<td>${assay.module.url}</td>
442	<td>
443	<g:each in="${assay.samples}" var="assaySample">
444	${assaySample.name}<br>
445	</g:each>
446	</td>
447	</tr>
448	</g:each>
449	</table>
450	</g:else>
451
452
453	</table>
454	</td>
455	</g:each>
456	</tr>
457	</table>
458
459	</div>
460
461	</div>
462
463	<% } %>
464
465	<% if (selectedStudies.size()==0) {%>
466	Please select studies to compare.
467	<% } %>
468
469	</div>
470
471
472	</body>
473	</html>

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