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list_extended.gsp @ 223

Last change on this file since 223 was 223, checked in by ademcan, 13 years ago
Study List and Study Comparaison
File size: 13.2 KB

Line
1
2	<%@ page import="dbnp.studycapturing.Study" %>
3	<html>
4	<head>
5	<meta http-equiv="Content-Type" content="text/html; charset=UTF-8" />
6	<meta name="layout" content="main" />
7	<g:set var="entityName" value="${message(code: 'study.label', default: 'Study')}" />
8	<title><g:message code="default.list.label" args="[entityName]" /></title>
9
10	<my:jqueryui/>
11	<script type="text/javascript">
12	$(function() {
13	$("#tabs").tabs();
14	});
15	</script>
16
17	</head>
18	<body>
19
20	<% studyList = dbnp.studycapturing.Study.list() %>
21	<% def att_list = ['template','startDate','events','samplingEvents','lastUpdated','readers','code','editors','ecCode','researchQuestion','title','description','owner','dateCreated'] %>
22	<% def selectedStudies = [] %>
23	<% def tmpList = [] %>
24
25	<div class="nav">
26	<span class="menuButton"><a class="home" href="${createLink(uri: '/')}">Home</a></span>
27	<span class="menuButton"><g:link class="list" action="list"><g:message code="default.list.label" args="[entityName]" /></g:link></span>
28	<span class="menuButton"><g:link class="create" action="create"><g:message code="default.new.label" args="[entityName]" /></g:link></span>
29	</div>
30
31	<div class="body">
32	<h1>Studies Comparison</h1>
33	<g:if test="${flash.message}">
34	<div class="message">${flash.message}</div>
35	</g:if>
36
37	<% params.each{key,values-> %>
38	<% if (values=="on"){ %>
39	<% tmpList.add(key) %>
40	<% } }%>
41
42	<% for (i in studyList) {%>
43	<% if (tmpList.contains(i.getTitle())) { %>
44	<% selectedStudies.add(i) %>
45	<% }} %>
46
47	<% if (selectedStudies.size()>0) {%>
48
49
50	<div id="tabs">
51	<ul>
52	<li><a href="#study">Study Information</a></li>
53	<li><a href="#subjects">Subjects</a></li>
54	<li><a href="#groups">Groups</a></li>
55	<li><a href="#protocols">Protocols</a></li>
56	<li><a href="#events">Events</a></li>
57	<li><a href="#event-description">Event Description</a></li>
58	<li><a href="#event-group">Event Groups</a></li>
59	<li><a href="#assays">Assays</a></li>
60	</ul>
61
62
63	<div id="study">
64	<br>
65	<table>
66	<tr>
67	<td></td>
68	<g:each in="${selectedStudies}" status="j" var="studyIns">
69	<td width="50%"><b>${studyIns.title}</b></td>
70	</g:each>
71	</tr>
72	<tr>
73	<td><b>Id</b></td>
74	<g:each in="${selectedStudies}" status="k" var="studyIns">
75	<td><g:link action="show" id="${studyIns.id}">
76	${fieldValue(bean: studyIns, field: "id")}</g:link></td>
77	</g:each>
78	</tr>
79
80	<g:each in="${att_list}" var="att">
81	<tr>
82	<td><b>${att[0].toUpperCase()+att.substring(1)}</b></td>
83	<g:each in="${selectedStudies}" status="k" var="studyIns">
84
85	<g:if test="${att == 'events'}">
86	<td>
87	<% def eventList = [] %>
88	<g:each in="${studyIns.events}" var="s">
89	<% eventList.add(s.eventDescription) %>
90	</g:each>
91	<g:if test="${eventList.size()==0}">
92	-
93	</g:if>
94	<g:else>
95	<% def sampEvent = eventList.get(0).name %>
96	${sampEvent}
97	<g:each in="${eventList}" var="event">
98	<g:if test="${(event.name!=sampEvent)}">
99	${event.name}
100	</g:if>
101	</g:each>
102	</g:else>
103	</td>
104	</g:if>
105
106	<g:elseif test="${att == 'samplingEvents'}">
107	<td>
108	<% def SampeventList = [] %>
109	<g:each in="${studyIns.samplingEvents}" var="s">
110	<% SampeventList.add(s.eventDescription) %>
111	</g:each>
112	<g:if test="${SampeventList.size()==0}">
113	-
114	</g:if>
115	<g:else>
116	<% def samplEvent = SampeventList.get(0).name %>
117	${samplEvent}
118	<g:each in="${SampeventList}" var="samplingEvent">
119	<g:if test="${(samplingEvent.name!=samplEvent)}">
120	${samplingEvent.name}
121	</g:if>
122	</g:each>
123	</g:else>
124	</td>
125	</g:elseif>
126
127	<g:else>
128	<td>${fieldValue(bean: studyIns, field: att)}</td>
129	</g:else>
130	</g:each>
131	</tr>
132	</g:each>
133
134	</table>
135	</div>
136
137	<div id="subjects">
138
139	<table border="2">
140	<tr>
141	<g:each in="${selectedStudies}" var="study">
142	<td><center><b>${study.title}</b></center></td>
143	</g:each>
144	</tr>
145
146	<tr>
147	<g:each in="${selectedStudies}" var="stud">
148	<td>
149
150	<table>
151	<tr>
152	<td><b>Id </b></td>
153	<td><b>Species</b></td>
154	<td><b>Name</b></td>
155	<g:each in="${stud.template.subjectFields}" var="g">
156	<td><b>
157	<g:link controller="templateSubjectField" action="show" id="${g.id}">
158	${g}</b></td>
159	</g:link>
160	</g:each>
161	</tr>
162
163	<g:each in="${stud.subjects}" var="s">
164	<tr>
165	<td><g:link controller="subject" action="show" id="${s.id}">${s.id}</g:link></td>
166	<td>${s.species}</td>
167	<td>${s.name}</td>
168
169	<g:each in="${stud.template.subjectFields}" var="g">
170	<td>
171	<% print s.getFieldValue(g.toString()) %>
172	</td>
173	</g:each>
174	</tr>
175	</g:each>
176	</table>
177
178	</td>
179	</g:each>
180	</tr>
181	</table>
182
183	</div>
184
185	<div id="groups">
186	<table border="2">
187	<tr>
188	<g:each in="${selectedStudies}" var="study">
189	<td width="50%"><center><b>${study.title}</b></center></td>
190	</g:each>
191	</tr>
192	<tr>
193	<g:each in="${selectedStudies}" var="study">
194	<td>
195	<g:if test="${study.groups.size()==0}"> No groups in this study </g:if>
196	<g:else><center><b>${study.groups}</b></center></g:else>
197	</td>
198	</g:each>
199	</tr>
200	</table>
201	</div>
202
203	<div id="protocols">
204	<table border="2">
205	<tr>
206	<g:each in="${selectedStudies}" var="study">
207	<td width="50%"><center><b>${study.title}</b></center></td>
208	</g:each>
209	</tr>
210
211	<tr>
212	<g:each in="${selectedStudies}" var="stud">
213	<td>
214	<table>
215	<tr>
216	<td><b>Id </b></td>
217	<td><b>Name</b></td>
218	<td><b>Parameters</b></td>
219	<td><b>Reference</b></td>
220	</tr>
221
222	<% def protocol_list = [] %>
223	<% def tmp_protocol = stud.events.eventDescription.protocol.get(0) %>
224	<% def tmpBis_protocol = stud.samplingEvents.eventDescription.protocol.get(0) %>
225	<% protocol_list.add(tmp_protocol) %>
226	<% protocol_list.add(tmpBis_protocol) %>
227
228	<g:each in="${stud.events.eventDescription.protocol}" var="s">
229	<% if (tmp_protocol!=s) { %>
230	<% protocol_list.add(s) %>
231	<%}%>
232	</g:each>
233
234	<g:each in="${stud.samplingEvents.eventDescription.protocol}" var="s">
235	<% if (tmpBis_protocol!=s) { %>
236	<% protocol_list.add(s) %>
237	<%}%>
238	</g:each>
239
240	<g:each in="${protocol_list}" var="protocol">
241	<tr>
242	<td><g:link controller="protocol" action="show" id="${protocol.id}">${protocol.id}</g:link></td>
243	<td>${protocol.name}</td>
244	<td>
245	<g:each in="${protocol.parameters}" var="p"><ul><li>
246	<g:link controller="protocolParameter" action="show" id="${p.id}">${p.name}</g:link>
247	</li></ul>
248	</g:each>
249	</td>
250	<td>${protocol.reference}</td>
251	</tr>
252	</g:each>
253	</table>
254
255	</td>
256	</g:each>
257	</tr>
258	</table>
259	</div>
260
261	<div id="events">
262	<table border="2">
263	<tr>
264	<g:each in="${selectedStudies}" var="study">
265	<td><center><b>${study.title}</b></center></td>
266	</g:each>
267	</tr>
268
269	<tr>
270	<g:each in="${selectedStudies}" var="stud">
271	<td>
272
273	<table>
274	<tr>
275	<td><b>Event Description</b></td>
276	<td><b>Subject</b></td>
277	<td><b>Start Time</b></td>
278	<td><b>Duration</b></td>
279	<td><b>Sampling Event</b></td>
280	<td><b>Parameters</b></td>
281	</tr>
282
283	<g:each in="${stud.events}" var="e">
284	<tr>
285	<td><g:link controller="event" action="show" id="${e.id}"> ${e.eventDescription.name}</g:link></td>
286	<td>${e.subject.id}</td>
287	<td>${e.getPrettyDuration(stud.startDate,e.startTime)}</td>
288	<td>${e.getPrettyDuration()}</td>
289	<td><g:checkBox name="event" disabled="${true}" value="${false}"/></td>
290	<g:each in="${e.eventDescription.protocol.parameters}" var="param">
291	<td>
292	${param.name} : ${param.listEntries}
293	</td>
294	</g:each>
295	</tr>
296	</g:each>
297
298	<g:each in="${stud.samplingEvents}" var="e">
299	<tr>
300	<td><g:link controller="event" action="show" id="${e.id}">${e.eventDescription.name}</g:link></td>
301	<td>${e.subject.id}</td>
302	<td>${e.getPrettyDuration(stud.startDate,e.startTime)}</td>
303	<td>${e.getPrettyDuration()}</td>
304	<td><g:checkBox name="samplingEvent" disabled="${true}" value="${true}"/></td>
305
306	<g:each in="${e.eventDescription.protocol.parameters}" var="param">
307	<td>
308	${param.name} : ${param.listEntries}
309	</td>
310	</g:each>
311	</tr>
312	</g:each>
313
314
315	</table>
316	</td>
317	</g:each>
318	</tr>
319	</table>
320
321	</div>
322
323	<div id="event-description">
324	<table border="2">
325	<tr>
326	<g:each in="${selectedStudies}" var="study">
327	<td><center><b>${study.title}</b></center></td>
328	</g:each>
329	</tr>
330	<tr>
331	<g:each in="${selectedStudies}" var="stud">
332	<td>
333	<table>
334	<tr>
335
336	<td><b>Event Name</b></td>
337	<td><b>Parameters </b></td>
338	</tr>
339	<tr>
340	<td><b></b></td>
341	<td><b>Name</b></td>
342	<td><b>Description</b></td>
343	<td><b>Unit</b></td>
344	<td><b>Reference</b></td>
345	<td><b>Options</b></td>
346	<td><b>Type</b></td>
347	</tr>
348	<g:each in="${dbnp.studycapturing.EventDescription.list()}" var="e">
349	<g:if test="${(stud.events.eventDescription.contains(e))}" >
350	<tr>
351	<td>${e.name} </td></tr><tr>
352	<g:each in="${e.protocol.parameters}" var="p">
353	<td></td>
354	<td>${p.name}</td>
355	<td>${p.description}</td>
356	<td>${p.unit}</td>
357	<td>${p.reference}</td>
358	<g:if test="${(p.listEntries.size()==0)}" >
359	<td>-</td>
360	</g:if>
361	<g:else>
362	<td>${p.listEntries}</td>
363	</g:else>
364	<td>${p.type}</td>
365	</tr>
366	</g:each>
367	</g:if>
368	</g:each>
369
370	<g:each in="${dbnp.studycapturing.EventDescription.list()}" var="e">
371	<g:if test="${(stud.samplingEvents.eventDescription.contains(e))}" >
372	<tr>
373	<td>${e.name} </td></tr><tr>
374	<g:each in="${e.protocol.parameters}" var="p">
375	<td></td>
376	<td>${p.name}</td>
377	<td>${p.description}</td>
378	<td>${p.unit}</td>
379	<td>${p.reference}</td>
380	<g:if test="${(p.listEntries.size()==0)}" >
381	<td>-</td>
382	</g:if>
383	<g:else>
384	<td>${p.listEntries}</td>
385	</g:else>
386	<td>${p.type}</td>
387	</tr>
388	</g:each>
389	</g:if>
390	</g:each>
391
392	</table>
393	</td>
394	</g:each>
395	</tr>
396	</table>
397
398	</div>
399
400	<div id="event-group">
401	</div>
402
403	<div id="assays">
404	<table border="2">
405	<tr>
406	<g:each in="${selectedStudies}" var="study">
407	<td><center><b>${study.title}</b></center></td>
408	</g:each>
409	</tr>
410	<tr>
411	<g:each in="${selectedStudies}" var="stud">
412	<td>
413	<table>
414	<tr><td>
415	<g:if test="${stud.assays.size()==0}">
416	No assays in this study
417	</g:if>
418	<g:else>
419	<table>
420	<tr>
421
422	<td width="100"><b>Assay Name</b></td>
423	<td width="100"><b>Module</b></td>
424	<td><b>Type</b></td>
425	<td width="150"><b>Platform</b></td>
426	<td><b>Url</b></td>
427	<td><b>Samples</b></td>
428	</tr>
429	<g:each in="${stud.assays}" var="assay">
430	<tr>
431	<td>${assay.name}</td>
432	<td>${assay.module.name}</td>
433	<td>${assay.module.type}</td>
434	<td>${assay.module.platform}</td>
435	<td>${assay.module.url}</td>
436	<td>
437	<g:each in="${assay.samples}" var="assaySample">
438	${assaySample.name}<br>
439	</g:each>
440	</td>
441	</tr>
442	</g:each>
443	</table>
444	</g:else>
445
446
447	</table>
448	</td>
449	</g:each>
450	</tr>
451	</table>
452
453	</div>
454
455	</div>
456
457	<% } %>
458
459	<% if (selectedStudies.size()==0) {%>
460	Please select studies to compare.
461	<% } %>
462
463	</div>
464
465
466	</body>
467	</html>

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