source: trunk/grails-app/domain/dbnp/clinicaldata/ClinicalMeasurement.groovy @ 187

package dbnp.clinicaldata

import dbnp.data.FeatureType

class ClinicalMeasurement
 extends dbnp.data.FeatureBase {

        // For now, let's assume that quantitative values are stored as float,
        // and qualitative values as string
        // We can always add an additional ClinicalMeasurementType datatype (FLOAT, INTEGER etc.) later (as was here until rev 186)

        String referenceValues
        float detectableLimit
        String correctionMethod
        boolean isDrug
        boolean isIntake
        boolean inSerum

        static constraints = {
                name(unique:true)
                referenceValues(nullable: true, blank: true)
                detectableLimit(nullable: true)
                correctionMethod(nullable: true, blank: true)
        }

        Map getValues(long assayID, String[] sampleIDs) {
                FeatureType featureType = type
                switch(featureType) {
                        case FeatureType.QUANTITATIVE:
                                def values = ClinicalFloatData.withCriteria {
                                        assay { eq("id",assayID) }
                                        eq("measurement",this)
                                        'in'("sample",sampleIDs)
                                }
                                def result = new HashMap<String,Float>();
                                values.each {
                                        result.put(it.sample,it.value)
                                }
                                return result
                        default:
                                throw new NoSuchFieldException("Feature type ${featureType} not supported")
                }
        }
}