[215] | 1 | /** |
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| 2 | * Importer controller |
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| 3 | * |
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| 4 | * The importer controller handles the uploading of tabular, comma delimited and Excel format |
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| 5 | * based files. When uploaded a preview is shown of the data and the user can adjust the column |
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| 6 | * type. Data in cells which don't correspond to the specified column type will be represented as "#error". |
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| 7 | * |
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| 8 | * The importer controller catches the actions and consecutively performs the |
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| 9 | * logic behind it. |
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| 10 | * |
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| 11 | * @package importer |
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| 12 | * @author t.w.abma@umcutrecht.nl |
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| 13 | * @since 20100126 |
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| 14 | * |
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| 15 | * Revision information: |
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| 16 | * $Rev: 268 $ |
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| 17 | * $Author: tabma $ |
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| 18 | * $Date: 2010-03-15 18:16:02 +0000 (ma, 15 mrt 2010) $ |
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| 19 | */ |
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| 20 | |
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| 21 | package dbnp.importer |
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| 22 | import org.apache.poi.hssf.usermodel.HSSFCell |
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| 23 | import org.apache.poi.ss.usermodel.DataFormatter |
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| 24 | import dbnp.studycapturing.Template |
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[251] | 25 | import dbnp.studycapturing.Study |
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| 26 | import dbnp.studycapturing.Subject |
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| 27 | import dbnp.studycapturing.Event |
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| 28 | import dbnp.studycapturing.Protocol |
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| 29 | import dbnp.studycapturing.Sample |
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| 30 | import dbnp.studycapturing.TemplateFieldType |
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[215] | 31 | |
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| 32 | class ImporterController { |
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| 33 | def ImporterService |
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| 34 | |
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| 35 | /** |
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| 36 | * Default page |
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| 37 | **/ |
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| 38 | def index = { |
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| 39 | [templates:Template.list()] |
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| 40 | } |
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| 41 | |
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| 42 | /** |
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| 43 | * This method will move the uploaded file to a temporary path and send the header |
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| 44 | * and the first n rows to the preview |
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| 45 | * @param importfile uploaded file to import |
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| 46 | */ |
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| 47 | def upload = { |
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| 48 | def downloadedfile = request.getFile('importfile'); |
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| 49 | def tempfile = new File(System.getProperty('java.io.tmpdir') + File.separatorChar + System.currentTimeMillis() + ".nmcdsp") |
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| 50 | downloadedfile.transferTo(tempfile) |
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| 51 | |
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| 52 | def wb = ImporterService.getWorkbook(new FileInputStream(tempfile)) |
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| 53 | |
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| 54 | def header = ImporterService.getHeader(wb, 0) |
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| 55 | def datamatrix= ImporterService.getDatamatrix(wb, 0, 5) |
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| 56 | |
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| 57 | session.header = header |
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| 58 | session.importtemplate_id = params.template_id |
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[268] | 59 | session.workbook = wb |
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[215] | 60 | |
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| 61 | render (view:"step1", model:[header:header, datamatrix:datamatrix]) |
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| 62 | } |
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| 63 | |
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| 64 | /** |
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[256] | 65 | * User has assigned all entities and templatefieldtypes to the columns and continues to the next step (assigning properties to columns) |
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[251] | 66 | * All information of the columns is stored in a session as MappingColumn object |
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[215] | 67 | * |
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[245] | 68 | * @param entity list of entities and columns it has been assigned to (columnindex:entitytype format) |
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[256] | 69 | * @param templatefieldtype list of celltypes and columns it has been assigned to (columnindex:templatefieldtype format) |
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[215] | 70 | * @return properties page |
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[251] | 71 | * |
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| 72 | * @see celltype: http://poi.apache.org/apidocs/org/apache/poi/ss/usermodel/Cell.html |
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[215] | 73 | */ |
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[256] | 74 | def savepreview = { |
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| 75 | def tft = null |
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[215] | 76 | def entities = request.getParameterValues("entity") |
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[256] | 77 | def templatefieldtypes = request.getParameterValues("templatefieldtype") |
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[215] | 78 | |
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[256] | 79 | templatefieldtypes.each { t -> |
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| 80 | def temp = t.split(":") |
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| 81 | def templatefieldtype = temp[1] |
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[245] | 82 | |
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[256] | 83 | switch (templatefieldtype) { |
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| 84 | case "STRING" : tft = TemplateFieldType.STRING |
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| 85 | break |
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| 86 | case "TEXT" : tft = TemplateFieldType.TEXT |
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| 87 | break |
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| 88 | case "INTEGER" : tft = TemplateFieldType.INTEGER |
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| 89 | break |
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| 90 | case "FLOAT" : tft = TemplateFieldType.FLOAT |
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| 91 | break |
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| 92 | case "DOUBLE" : tft = TemplateFieldType.DOUBLE |
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| 93 | break |
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| 94 | case "STRINGLIST" : tft = TemplateFieldType.STRINGLIST |
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| 95 | break |
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| 96 | case "ONTOLOGYTERM" : tft = TemplateFieldType.ONTOLOGYTERM |
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| 97 | break |
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| 98 | case "DATE" : tft = TemplateFieldType.DATE |
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| 99 | break |
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[251] | 100 | default: break |
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| 101 | } |
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[256] | 102 | session.header[temp[0].toInteger()].templatefieldtype = tft |
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[245] | 103 | } |
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| 104 | |
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| 105 | entities.each { e -> |
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| 106 | def temp = e.split(":") |
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[256] | 107 | Class clazz |
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[251] | 108 | |
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| 109 | switch (temp[1].toInteger()) { |
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[245] | 110 | case 0: clazz = Study |
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| 111 | break |
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| 112 | case 1: clazz = Subject |
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| 113 | break |
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| 114 | case 2: clazz = Event |
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| 115 | break |
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| 116 | case 3: clazz = Protocol |
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| 117 | break |
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| 118 | case 4: clazz = Sample |
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| 119 | break |
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[251] | 120 | default: clazz = Object |
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[256] | 121 | break |
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[245] | 122 | } |
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[251] | 123 | |
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| 124 | session.header[temp[0].toInteger()].index = temp[0].toInteger() |
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[245] | 125 | session.header[temp[0].toInteger()].entity = clazz |
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| 126 | } |
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| 127 | |
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[215] | 128 | // currently only one template is used for all entities |
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| 129 | // TODO: show template fields per entity |
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| 130 | |
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| 131 | def templates = Template.get(session.importtemplate_id) |
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| 132 | |
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| 133 | render(view:"step2", model:[entities:entities, header:session.header, templates:templates]) |
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| 134 | } |
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[245] | 135 | |
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| 136 | /** |
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| 137 | * @param columnproperty array of columns and the assigned property in `column:property_id` format |
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| 138 | * |
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| 139 | */ |
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| 140 | def saveproperties = { |
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[256] | 141 | def columnproperties = request.getParameterValues("columnproperty") |
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[245] | 142 | |
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| 143 | columnproperties.each { cp -> |
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| 144 | def temp = cp.split(":") |
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[251] | 145 | session.header[temp[0].toInteger()].property = temp[1].toInteger() |
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| 146 | } |
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| 147 | |
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[268] | 148 | /*for (e in session.header) { |
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[245] | 149 | println e |
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[268] | 150 | }*/ |
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| 151 | |
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| 152 | //import workbook |
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| 153 | ImporterService.importdata(session.importtemplate_id, session.workbook, 0, 0, session.header) |
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| 154 | //println session.header.dump() |
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| 155 | |
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[245] | 156 | render ("properties saved") |
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| 157 | } |
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[215] | 158 | } |
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