1 | |
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2 | /* |
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3 | * Copyright 2007 the original author or authors. |
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4 | * |
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5 | * Licensed under the Apache License, Version 2.0 (the "License"); |
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6 | * you may not use this file except in compliance with the License. |
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7 | * You may obtain a copy of the License at |
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8 | * |
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9 | * http://www.apache.org/licenses/LICENSE-2.0 |
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10 | * |
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11 | * Unless required by applicable law or agreed to in writing, software |
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12 | * distributed under the License is distributed on an "AS IS" BASIS, |
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13 | * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. |
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14 | * See the License for the specific language governing permissions and |
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15 | * limitations under the License. |
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16 | */ |
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17 | |
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18 | import org.compass.core.engine.SearchEngineQueryParseException |
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19 | |
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20 | /** |
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21 | * Basic web interface for Grails Searchable Plugin |
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22 | * |
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23 | * @author Adem and Jahn |
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24 | */ |
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25 | class SearchableController { |
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26 | def searchableService |
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27 | |
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28 | def selectsample = { |
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29 | |
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30 | |
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31 | // produce error message here if studies don't contain samples! |
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32 | // redirect back or use error |
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33 | |
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34 | |
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35 | println "in selectsample: " |
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36 | params.each{println it} |
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37 | |
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38 | // prepare showing all studies selected in the previous view |
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39 | def selectedStudies = [] |
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40 | def selectedStudyIds = params['selectedStudyIds'] |
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41 | |
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42 | if(selectedStudyIds!=null) |
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43 | { |
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44 | def list = selectedStudyIds.findAll(/(\d)+/) |
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45 | selectedStudies = list.collect{ dbnp.studycapturing.Study.get(it) } |
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46 | } |
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47 | else |
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48 | { |
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49 | def tmpList = [] |
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50 | def studyList = dbnp.studycapturing.Study.list() |
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51 | selectedStudyIds = [] |
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52 | params.each{ key,values-> |
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53 | if (values=="on") tmpList.add(key) |
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54 | } |
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55 | |
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56 | for (i in studyList) |
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57 | if (tmpList.contains(i.getId().toString())) |
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58 | { |
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59 | selectedStudyIds.add(i.id) |
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60 | selectedStudies.add(i) |
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61 | } |
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62 | } |
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63 | |
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64 | |
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65 | // subgroups |
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66 | // provide list of subgroups depending on the type of subgrouping |
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67 | // selected by the user |
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68 | def subgroups = [] |
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69 | def submitButton = params["submit"] // this button's value determines the kind of subgrouping |
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70 | |
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71 | switch(submitButton) |
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72 | { |
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73 | case "Subject Groups": |
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74 | render(params) |
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75 | render("Subject Groups") |
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76 | def studyGroups = [] |
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77 | if(selectedStudies!=null) |
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78 | { |
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79 | selectedStudies.each{ study -> |
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80 | study.groups.each{ group -> studyGroups.add[group] } |
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81 | } |
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82 | println "study groups: " |
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83 | studyGroups.each{x-> println x} |
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84 | } |
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85 | |
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86 | // testing: |
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87 | // there is a lack of data in the mockup (subject groups are still missing) |
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88 | // as long as there are no groups in the boot script, |
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89 | // we use this |
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90 | subgroups = studyGroups.size()<=0 ? |
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91 | ["subject group 1","subject group 2"] : studyGroups |
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92 | |
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93 | render(view:"selectsample",model:[selectedStudies:selectedStudies,selectedStudyIds:selectedStudyIds,subgroups:subgroups]) |
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94 | break |
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95 | |
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96 | case "Event Groups": |
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97 | def eventGroups = [] |
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98 | if(selectedStudies!=null) |
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99 | { |
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100 | selectedStudies.each{ study -> |
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101 | println study.id |
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102 | println study.samplingEvents.each{ eventGroups.add(it) } |
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103 | } |
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104 | } |
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105 | subgroups=eventGroups |
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106 | render(view:"selectsample",model:[selectedStudies:selectedStudies,selectedStudyIds:selectedStudyIds,subgroups:subgroups]) |
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107 | break |
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108 | |
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109 | case "Starting Time Groups": |
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110 | |
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111 | def timeGroups = [] |
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112 | if(selectedStudies!=null) |
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113 | { |
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114 | selectedStudies.each{ study -> |
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115 | println study.samplingEvents.each{ |
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116 | def timeDiff = it.getPrettyDuration( study.startDate, it.startTime ) |
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117 | if( !timeGroups.contains(timeDiff) ) timeGroups.add(timeDiff) |
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118 | } |
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119 | } |
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120 | } |
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121 | subgroups=timeGroups |
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122 | render("Starting Time Groups") |
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123 | render(view:"selectsample",model:[selectedStudies:selectedStudies,selectedStudyIds:selectedStudyIds,subgroups:subgroups]) |
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124 | break |
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125 | |
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126 | case ">> Execute and continue with biomarker selection": |
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127 | render("Starting Time Groups") |
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128 | break |
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129 | case "<< Back to study selection": |
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130 | break |
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131 | } |
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132 | render(view:"selectsample",model:[selectedStudies:selectedStudies,selectedStudyIds:selectedStudyIds,subgroups:subgroups]) |
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133 | } |
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134 | |
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135 | |
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136 | |
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137 | /** |
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138 | * Index page with search form and results |
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139 | */ |
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140 | def index = { |
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141 | if (!params.q?.trim()) { |
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142 | return [:] |
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143 | } |
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144 | try { |
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145 | return [searchResult: searchableService.search(params.q, params)] |
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146 | } catch (SearchEngineQueryParseException ex) { |
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147 | return [parseException: true] |
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148 | } |
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149 | } |
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150 | |
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151 | /** |
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152 | * Perform a bulk index of every searchable object in the database |
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153 | */ |
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154 | def indexAll = { |
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155 | Thread.start { |
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156 | searchableService.index() |
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157 | } |
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158 | render("bulk index started in a background thread") |
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159 | } |
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160 | |
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161 | /** |
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162 | * Perform a bulk index of every searchable object in the database |
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163 | */ |
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164 | def unindexAll = { |
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165 | searchableService.unindex() |
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166 | render("unindexAll done") |
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167 | } |
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168 | |
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169 | |
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170 | def subjectGroups = { render ("hello") } |
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171 | |
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172 | |
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173 | } |
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