[146] | 1 | import dbnp.studycapturing.* |
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[144] | 2 | |
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| 3 | // The sandbox is meant for internal communication over code examples etc. |
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| 4 | class SandboxController { |
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| 5 | |
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[187] | 6 | def clinicalDataLayerService |
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[919] | 7 | def oauthService |
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[187] | 8 | |
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[146] | 9 | def index = { |
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[144] | 10 | |
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[146] | 11 | // Get the example study in a lazy way |
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| 12 | def st = Study.get(1) |
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[375] | 13 | println st.title |
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| 14 | println st.subjects |
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| 15 | def fieldsAll = st.giveSubjectTemplates().asList().first().fields |
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[253] | 16 | def f = fieldsAll[0] |
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| 17 | println fieldsAll.class |
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| 18 | println f.class |
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| 19 | f.each { |
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| 20 | println "" + it + "-" + it.class |
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| 21 | } |
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| 22 | //println st.giveAllFields() |
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[144] | 23 | |
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[146] | 24 | // This is a way to iterate over the fields in your controller |
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| 25 | // And print them to the console |
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| 26 | // Most of the time, you would just iterate over them in the view using <g:each> |
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| 27 | // See also views/sandbox/index.gsp |
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[253] | 28 | f.each { field -> |
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[146] | 29 | println field.name + "(" + field.type + ")" |
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| 30 | } |
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[144] | 31 | |
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[146] | 32 | //Let's get a certain field for a certain subject |
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[187] | 33 | /*def subject = st.subjects.get(1) |
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| 34 | |
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| 35 | if (subject) { |
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[146] | 36 | println st.template.getSubjectFieldType('Age') |
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[176] | 37 | println subject.getFieldValue('Genotype') |
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| 38 | subject.setFieldValue('Genotype','wildtype') |
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| 39 | println subject.getFieldValue('Genotype') |
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| 40 | subject.setFieldValue('name','hallo') |
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[187] | 41 | println subject.name }*/ |
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[186] | 42 | |
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| 43 | |
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[187] | 44 | // Demonstration of querying mechanism |
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[375] | 45 | //println "Features available for first assay of PPSH study: " + clinicalDataLayerService.getFeaturesQuantitative(Study.findByCode("PPSH").assays*.id[0]) |
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| 46 | //println "LDL feature value for two subjects: " + clinicalDataLayerService.getDataQuantitative('LDL',1,['A1_B','A3_B'] as String[]) |
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[187] | 47 | |
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[146] | 48 | // Specify which variables we want to be available in the controller (implicit return statement) |
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[338] | 49 | [fields: f, subjects: st.subjects, studyInstance: st, subject: Subject.findByName('A1')] |
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[187] | 50 | } |
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[338] | 51 | |
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[923] | 52 | def oauth = { |
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[926] | 53 | def secret = session.oauthToken.secret |
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| 54 | def response = oauthService.accessResource('http://www.myexperiment.org/whoami.xml', 'myExperiment', |
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| 55 | [key: session.oauthToken.key, secret: session.oauthToken.secret], 'GET') |
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| 56 | |
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| 57 | render ("Calling whoami from myExperiment [key:" + session.oauthToken.key + ", secret:"+ session.oauthToken.secret+"]") |
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[925] | 58 | |
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[918] | 59 | render ("Response: " + response) |
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[338] | 60 | |
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[918] | 61 | } |
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| 62 | |
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| 63 | |
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[144] | 64 | } |
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