source: trunk/grails-app/conf/BootStrap.groovy @ 92

import org.codehaus.groovy.grails.commons.GrailsApplication
import grails.util.GrailsUtil
import dbnp.studycapturing.*
import intient.nimble.InstanceGenerator

/**
 * Application Bootstrapper
 * @Author Jeroen Wesbeek
 * @Since 20091021
 *
 * Revision information:
 * $Rev: 92 $
 * $Author: duh $
 * $Date: 2010-01-19 13:25:45 +0000 (di, 19 jan 2010) $
 */
class BootStrap {
        def init = {servletContext ->
                if (GrailsUtil.environment == GrailsApplication.ENV_DEVELOPMENT) {
                        printf("development bootstrapping....\n\n");

                        // ontologies
                        def speciesOntology = new Ontology(
                                name: 'Species',
                                shortName: 'Species',
                                url: 'http://www.obofoundry.org/cgi-bin/detail.cgi?id=ncbi_taxonomy'
                        ).save()

                        // terms
                        def mouseTerm = new Term(
                                name: 'Mus musculus',
                                ontology: speciesOntology,
                                accession: '10090'
                        ).save()
                        def humanTerm = new Term(
                                name: 'Homo sapiens',
                                ontology: speciesOntology,
                                accession: '9606'
                        ).save()

                        // create system user
                        /*
                        def systemUser = userService.createUser(InstanceGenerator.user(
                                username: 'system',
                                pass: 'system',
                                passConfirm: 'system',
                                enabled: true
                        ))
                        */

                        // define template fields
                        def genotypeTemplateField = new TemplateSubjectField(
                                name: 'Genotype',
                                type: TemplateFieldType.STRINGLIST
                        ).save()

                        // Mouse template
                        def mouseTemplate = new Template(
                                name: 'Mouse'
                        ).addToSubjectFields(genotypeTemplateField).save()
                }
        }

        def destroy = {
        }
}