source: trunk/grails-app/conf/BootStrap.groovy @ 138

import org.codehaus.groovy.grails.commons.GrailsApplication
import grails.util.GrailsUtil
import dbnp.studycapturing.*

import dbnp.data.Ontology
import dbnp.data.Term

/**
 * Application Bootstrapper
 * @Author Jeroen Wesbeek
 * @Since 20091021
 *
 * Revision information:
 * $Rev: 138 $
 * $Author: duh $
 * $Date: 2010-01-26 15:46:01 +0000 (di, 26 jan 2010) $
 */
class BootStrap {
        def init = {servletContext ->
                // define timezone
                System.setProperty('user.timezone', 'CET')      

                if (GrailsUtil.environment == GrailsApplication.ENV_DEVELOPMENT) {
                        printf("development bootstrapping....\n\n");

                        // ontologies
                        def speciesOntology = new Ontology(
                                name: 'NCBI Taxonomy',
                                shortName: 'Taxon',
                                url: 'http://www.obofoundry.org/cgi-bin/detail.cgi?id=ncbi_taxonomy'
                        ).save()

                        // terms
                        def mouseTerm = new Term(
                                name: 'Mus musculus',
                                ontology: speciesOntology,
                                accession: '10090'
                        ).save()
                        def humanTerm = new Term(
                                name: 'Homo sapiens',
                                ontology: speciesOntology,
                                accession: '9606'
                        ).save()

                        // create system user
                        /*
                        def systemUser = userService.createUser(InstanceGenerator.user(
                                username: 'system',
                                pass: 'system',
                                passConfirm: 'system',
                                enabled: true
                        ))
                        */

                        // Mouse template
                        def mouseTemplate = new Template(
                                name: 'Mouse'
                        ).addToSubjectFields(new TemplateSubjectField(
                                name: 'Genotype',type: TemplateFieldType.STRINGLIST))
                        .addToSubjectFields(new TemplateSubjectField(
                                name: 'Age',type: TemplateFieldType.NUMBER)
                        ).save()

                        // studies
                        def exampleStudy = new Study(
                                title:"NuGO PPS3 mouse study leptin module",
                                code:"PPS3_leptin_module",
                                researchQuestion:"Leptin etc.",
                                description:"C57Bl/6 mice were fed a high fat (45 en%) or low fat (10 en%) diet after a four week run-in on low fat diet. After 1 week 10 mice that received a low fat diet were given an IP leptin challenge and 10 mice of the low-fat group received placebo injections. The same procedure was performed with mice that were fed the high-fat diet. After 4 weeks the procedure was repeated. In total 80 mice were culled.",
                                ecCode:"2007117.c",
                                startDate: Date.parse('yyyy-MM-dd','2007-12-11'))
                        def x=1
                        12.times {
                                exampleStudy.addToSubjects(new Subject(
                                        name: "A" + x++,
                                        species: mouseTerm,
                                        templateStringFields: ["Genotype" : "C57/Bl6j"],
                                        templateNumberFields: ["Age" : 17F]
                                ))}
                        exampleStudy.save()

                        new Study(title:"example",code:"Excode",researchQuestion:"ExRquestion",description:"Exdescription",ecCode:"ExecCode",dateCreated:new Date(),lastUpdated:new Date(),startDate:new Date()).save()
                        new Study(title:"testAgain",code:"testcode",researchQuestion:"testRquestion",description:"testdescription",ecCode:"testCode",dateCreated:new Date(),lastUpdated:new Date(),startDate:new Date()).save()
                        new Study(title:"Exampletest",code:"Examplecode",researchQuestion:"ExampleRquestion",description:"Exampledescription",ecCode:"ExampleecCode",dateCreated:new Date(),lastUpdated:new Date(),startDate:new Date()).save()
                }
        }

        def destroy = {
        }
}