| 1 | import dbnp.authentication.SecRole |
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| 2 | import dbnp.authentication.SecUser |
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| 3 | import org.codehaus.groovy.grails.commons.GrailsApplication |
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| 4 | import dbnp.data.Ontology |
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| 5 | import dbnp.studycapturing.Template |
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| 6 | import dbnp.studycapturing.Study |
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| 7 | import dbnp.studycapturing.TemplateEntity |
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| 8 | import dbnp.studycapturing.Subject |
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| 9 | import dbnp.studycapturing.Sample |
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| 10 | import dbnp.rest.common.CommunicationManager |
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| 11 | |
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| 12 | /** |
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| 13 | * Application Bootstrapper |
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| 14 | * @Author Jeroen Wesbeek |
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| 15 | * @Since 20091021 |
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| 16 | * |
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| 17 | * Revision information: |
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| 18 | * $Rev: 1127 $ |
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| 19 | * $Author: work@osx.eu $ |
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| 20 | * $Date: 2010-11-12 11:11:35 +0000 (vr, 12 nov 2010) $ |
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| 21 | */ |
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| 22 | class BootStrap { |
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| 23 | // user spring security |
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| 24 | def springSecurityService |
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| 25 | |
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| 26 | def init = { servletContext -> |
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| 27 | // grom what's happening |
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| 28 | "bootstrapping application".grom() |
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| 29 | |
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| 30 | // define timezone |
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| 31 | System.setProperty('user.timezone', 'CET') |
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| 32 | |
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| 33 | // set up authentication (if required) |
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| 34 | if (!SecRole.count() || !SecUser.count()) BootStrapAuthentication.initDefaultAuthentication(springSecurityService) |
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| 35 | |
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| 36 | // developmental bootstrapping: |
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| 37 | // - templates |
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| 38 | // - ontologies |
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| 39 | // - and/or studies |
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| 40 | if (grails.util.GrailsUtil.environment == GrailsApplication.ENV_DEVELOPMENT) { |
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| 41 | // add ontologies? |
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| 42 | if (!Ontology.count()) BootStrapTemplates.initTemplateOntologies() |
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| 43 | |
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| 44 | // add templates? |
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| 45 | if (!Template.count()) BootStrapTemplates.initTemplates() |
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| 46 | |
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| 47 | // add example studies? |
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| 48 | if (!Study.count() && grails.util.GrailsUtil.environment != "demo") BootStrapStudies.addExampleStudies(SecUser.findByUsername('user'), SecUser.findByUsername('admin')) |
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| 49 | } |
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| 50 | |
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| 51 | /** |
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| 52 | * attach ontologies in runtime. Possible problem is that you need |
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| 53 | * an internet connection when bootstrapping though. |
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| 54 | * @see dbnp.studycapturing.Subject |
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| 55 | * @see dbnp.studycapturing.Sample |
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| 56 | */ |
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| 57 | TemplateEntity.getField(Subject.domainFields, 'species').ontologies = [Ontology.getOrCreateOntologyByNcboId(1132)] |
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| 58 | TemplateEntity.getField(Sample.domainFields, 'material').ontologies = [Ontology.getOrCreateOntologyByNcboId(1005)] |
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| 59 | |
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| 60 | // register SAM REST methods |
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| 61 | "Registering SAM REST methods".grom() |
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| 62 | CommunicationManager.registerRestWrapperMethodsSAMtoGSCF() |
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| 63 | } |
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| 64 | |
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| 65 | def destroy = { |
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| 66 | println "stopping application..." |
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| 67 | } |
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| 68 | } |
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