source: trunk/grails-app/conf/BootStrap.groovy @ 639

Last change on this file since 639 was 639, checked in by jahn, 12 years ago

Removed minor bug.

  • Property svn:keywords set to Author Rev Date
File size: 1.5 KB
RevLine 
[92]1import dbnp.studycapturing.*
[15]2
[106]3import dbnp.data.Ontology
4import dbnp.data.Term
[636]5import dbnp.rest.common.CommunicationManager
[406]6import org.codehaus.groovy.grails.commons.GrailsApplication
[550]7import grails.util.GrailsUtil
[106]8
[15]9/**
10 * Application Bootstrapper
[92]11 * @Author Jeroen Wesbeek
12 * @Since 20091021
[15]13 *
14 * Revision information:
15 * $Rev: 639 $
16 * $Author: jahn $
17 * $Date: 2010-07-01 15:29:46 +0000 (do, 01 jul 2010) $
18 */
[4]19class BootStrap {
[626]20        def init = {servletContext ->
[138]21                // define timezone
[246]22                System.setProperty('user.timezone', 'CET')
[95]23
[626]24                if (Template.count() == 0) {
25                        println "No templates in the current database.";
26                        // Add example study, subject, event etc. templates
27                        BootStrapTemplates.initTemplates()
[347]28
[421]29                        // Add example studies
[626]30                        if (Study.count() == 0 && grails.util.GrailsUtil.environment == GrailsApplication.ENV_DEVELOPMENT) {
[564]31
[626]32                                // When the code is properly refactored, BootStrapStudies.addExampleStudies() may be called here
[186]33                        }
[569]34                }
[567]35
[571]36                /**
37                 * attach ontologies in runtime. Possible problem is that you need
38                 * an internet connection when bootstrapping though.
39                 * @see dbnp.studycapturing.Subject
40                 * @see dbnp.studycapturing.Sample
41                 */
[569]42                TemplateEntity.getField(Subject.domainFields, 'species').ontologies = [Ontology.getOrCreateOntologyByNcboId(1132)]
43                TemplateEntity.getField(Sample.domainFields, 'material').ontologies = [Ontology.getOrCreateOntologyByNcboId(1005)]
[636]44
45                // register methods for accessing SAM's Rest services
[638]46                CommunicationManager.SAMServerURL = 'nbx5.nugo.org/sam'
[636]47        CommunicationManager.registerRestWrapperMethodsSAMtoGSCF()
[92]48        }
49
50        def destroy = {
51        }
[366]52} 
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