Galaxy Development Environment

This documents the Galaxy development environment as it is used in the BioAssist? metabolomics taskforce.

Set up local development environment

  • install Mercurial
  • set up Galaxy development environment --> see  http://wiki.g2.bx.psu.edu/Admin/Get%20Galaxy
  • configure Galaxy to run on port 8090 (change
    port = 8080
    
    to
    port = 8090
    
    in universe_wsgi.ini
  • run Galaxy with
    sh run.sh
    
  • for SURFconext authentication, set
    use_remote_user = True
    
    in universe_wsgi.ini