Welcome to the NBIC Galaxy Module Repository

Project members

• (owner)
• Barbera Van Schaik (owner)
• Ishtiaq Ahmad (owner)
• Kees Van Bochove (owner)
• Marc Van Driel (owner)
• Pieter Neerincx (owner)
• Rob Hooft (owner)
• Hailiang Mei (owner)
• Berend Hoekman
• Elizabeth Mcclellan
• Freek De Bruijn
• Jan Van Haarst
• Martijn Vermaat
• Michael Van Vliet
• Morris Swertz
• Niek Bosch
• Rutger Brouwer
• Salvo
• Victor De Jager
• Vikram Mitra
• Yuching Lai
• J F J Laros
• Jose Muino
• M Dehollander
• M S Vanvliet
• S H Sikkema
• S Hiltemann

This project contains Galaxy tools developed by various research groups in the ​BioAssist platforms.

Please see the README file included with the source code for instructions on how to:

• Install these tools in a Galaxy server.
• Add your own tools to this collection.

If you want to give these tools a try without installing them in a local Galaxy server first, you can visit the ​NBIC Galaxy development server.
(Most of the tools from this collection should be installed there, but be aware that the versions installed on the development Galaxy server are not necessarily always 100% in sync with the code in this repository.)

If you have any questions or need assistance, please contact the project admins via the galaxytools-devel mailinglist (see below).

Mailing lists

This project provides the following mailing lists.

• ​galaxytools-users: a list intended for general discussion on the project.
• ​galaxytools-commits: a list that receives source code commit messages.
• ​galaxytools-devel: a list intended for discussion among developers (subscription is restricted to registered developers).
• ​galaxytools-ngs-dev
• ​galaxytools-ngs-pis

Source access

Anonymous readonly subversion access works as follows:

  svn co https://trac.nbic.nl/svn/galaxytools galaxytools

Write access is only available to registered developers.

You can become a developer by ​registering yourself if you haven't already done so, and requesting write access on the ​galaxytools-users mailing list.

How to contribute

​https://wiki.nbic.nl/index.php/NBIC_Galaxy_Server:_Galaxy_Module_Repository

Other NBIC software projects

Many other NBIC software projects can be accessed from the ​project index.

License

This license holds for all files within this directory/repository that do not contain an explicit reference to another license.

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

Copyright (C) 2009-2013 by NBIC (www.nbic.nl)