Ticket #7 (closed task: fixed)

Opened 4 years ago

Last modified 3 years ago

Script to convert a Taverna Workflow entry on myExperiment into a Galaxy tool

Reported by: M.Roos1@… Owned by: kostas.karasavvas@…
Priority: major Milestone: Crude myExperiment to Galaxy
Component: Script to convert workflow from myExperiment to Galaxy tool Version:
Keywords: Cc: M.Roos1@…

Description

This script generates a Galaxy tool that can be installed in a Galaxy installation. It will require a restart of the Galaxy server. We will use it to generate a list of Taverna workflows as Galaxy tools. Others can use it to generate a Galaxy tool from a workflow of choice.

The input is a workflow URI on myExperiment. The output is a Galaxy tool with for each workflow input:
A table-column selector and a text field; the user selects one or the other. This is used to map between Galaxy and Taverna: column (Galaxy) -> StringList? (Taverna); text field (Galaxy) -> String Constant (Taverna)

The output is a table for which each output StringList? from Taverna is completely flattened, i.e. each value from the leave nodes are added as a new row in the Galaxy table. The column header is taken from the workflow output name. The first column always contains the reference to the Taverna Server results page.

[The output can be refined later]

Change History

Changed 4 years ago by M.Roos1@…

  • milestone changed from Galaxy-Taverna Proof of Concept to Crude myExperiment to Galaxy

Changed 4 years ago by M.Roos1@…

  • priority changed from critical to major

Changed 3 years ago by kostas.karasavvas@…

  • status changed from new to closed
  • resolution set to fixed
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