Changeset 133


Ignore:
Timestamp:
Jul 22, 2011, 3:06:18 PM (5 years ago)
Author:
kostas.karasavvas@…
Message:

Updated to comply new rake 's version tasks (Gem/RDoc), some cleanup in README and 0.2.8 in CHANGES

Location:
galaxy-taverna/workflow-to-galaxy
Files:
3 edited

Legend:

Unmodified
Added
Removed
  • galaxy-taverna/workflow-to-galaxy/CHANGES

    r109 r133  
    11= Changes log for the Taverna-Galaxy Gem
    22
     3== Version 0.2.8
     4* Clean up of documentation
     5* Added rubyzip dependency to gemspec
     6
     7
    38== Version 0.2.7
     9* A Galaxy tool can now also be created by providing a t2flow file with the --t2flow flag.
    410
    5 * A Galaxy tool can now also be created by provided a t2flow file with the --t2flow flag.
    6 
  • galaxy-taverna/workflow-to-galaxy/README

    r130 r133  
    33
    44Authors::     Konstantinos Karasavvas
    5 Gem Version:: 0.2.7
     5Gem Version:: 0.2.8
    66Contact::     mailto:kostas.karasavvas@nbic.nl
    77Licence::     MIT (See LICENCE or http://www.opensource.org/licenses/mit-license)
     
    1919
    2020The name is workflow-to-galaxy rather than t2-workflow-to-galaxy because it is
    21 possible that it will support other workflow management system's in the future.
     21possible that it will support other workflow management systems in the future.
    2222
    2323
    2424== Installation
    2525
    26 [sudo] gem install workflow-to-galaxy
     26  [sudo] gem install workflow-to-galaxy
    2727
    2828
     
    3737options are:
    3838
    39 -o OUTPUT, --output=OUTPUT  The file name(s) of the generated tool. If it is not specified then the workflow's name will be used.
     39  -o OUTPUT, --output=OUTPUT  The file name(s) of the generated tool. If it is not specified then the workflow's name will be used.
    4040
    41 -s SERVER, --server=SERVER  The taverna server that the script will request execution from. If it is not specified then "http://localhost:8980/taverna-server" will be used.
     41  -s SERVER, --server=SERVER  The taverna server that the script will request execution from. If it is not specified then "http://localhost:8980/taverna-server" will be used.
    4242
    43 -t,        --t2flow         The workflow is a t2flow file.
     43  -t,        --t2flow         The workflow is a t2flow file.
    4444
    4545
     
    4949from myExperiment repository:
    5050
    51 <tt>$ workflow_to_galaxy  -s http://localhost:8980/taverna-server  http://www.myexperiment.org/workflows/74/download/bioaid_proteindiscovery_781733.t2flow?version=5</tt>
     51  $ workflow_to_galaxy  -s http://localhost:8980/taverna-server  http://www.myexperiment.org/workflows/74/download/bioaid_proteindiscovery_781733.t2flow?version=5
    5252
    5353
     
    5555== References
    5656
    57 Galaxy::       http://galaxy.psu.edu
    58 Taverna2::     http://www.taverna.org.uk
    59 myExperiment:: http://www.myexperiment.org
     57Taverna-Galaxy:: https://trac.nbic.nl/elabfactory/wiki/eGalaxy
     58Galaxy::         http://galaxy.psu.edu
     59Taverna2::       http://www.taverna.org.uk
     60myExperiment::   http://www.myexperiment.org
    6061
  • galaxy-taverna/workflow-to-galaxy/Rakefile

    r130 r133  
    77require 'rake'
    88require 'rake/clean'
    9 require 'rake/gempackagetask'
    10 require 'rake/rdoctask'
    119require 'rake/testtask'
     10require 'rubygems/package_task'
     11require 'rdoc/task'
    1212
    1313spec = Gem::Specification.new do |s|
    1414  s.name = 'workflow-to-galaxy'
    15   s.version = '0.2.7'
     15  s.version = '0.2.8'
    1616  s.extra_rdoc_files = ['README', 'LICENSE', 'CHANGES']
    1717  s.summary = 'This script acquires information for a taverna 2 workflow from myExperiment (or from a file) and generates a Galaxy tool (.xml and .rb files).'
     
    2626  s.add_dependency 'taverna-t2flow', '>= 0.2.0'
    2727  s.add_dependency 't2-server', '>= 0.5.3'
     28  s.add_dependency 'rubyzip', '>= 0.9.4'
    2829end
    2930
    30 Rake::GemPackageTask.new(spec) do |p|
     31Gem::PackageTask.new(spec) do |p|
    3132  p.gem_spec = spec
    3233  p.need_tar = true
     
    3435end
    3536
    36 Rake::RDocTask.new do |rdoc|
    37   files =['README', 'LICENSE', 'lib/**/*.rb']
     37RDoc::Task.new do |rdoc|
     38  files =['README', 'LICENSE', 'CHANGES', 'lib/**/*.rb']
    3839  rdoc.rdoc_files.add(files)
    3940  rdoc.main = "README" # page to start on
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