Changeset 133

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Timestamp:
22-07-11 15:06:18 (3 years ago)
Author:
kostas.karasavvas@…
Message:

Updated to comply new rake 's version tasks (Gem/RDoc), some cleanup in README and 0.2.8 in CHANGES

Location:
galaxy-taverna/workflow-to-galaxy
Files:
3 modified

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  • galaxy-taverna/workflow-to-galaxy/CHANGES

    r109 r133  
    11= Changes log for the Taverna-Galaxy Gem 
    22 
     3== Version 0.2.8 
     4* Clean up of documentation 
     5* Added rubyzip dependency to gemspec 
     6 
     7 
    38== Version 0.2.7 
     9* A Galaxy tool can now also be created by providing a t2flow file with the --t2flow flag. 
    410 
    5 * A Galaxy tool can now also be created by provided a t2flow file with the --t2flow flag. 
    6  
  • galaxy-taverna/workflow-to-galaxy/Rakefile

    r130 r133  
    77require 'rake' 
    88require 'rake/clean' 
    9 require 'rake/gempackagetask' 
    10 require 'rake/rdoctask' 
    119require 'rake/testtask' 
     10require 'rubygems/package_task' 
     11require 'rdoc/task' 
    1212 
    1313spec = Gem::Specification.new do |s| 
    1414  s.name = 'workflow-to-galaxy' 
    15   s.version = '0.2.7' 
     15  s.version = '0.2.8' 
    1616  s.extra_rdoc_files = ['README', 'LICENSE', 'CHANGES'] 
    1717  s.summary = 'This script acquires information for a taverna 2 workflow from myExperiment (or from a file) and generates a Galaxy tool (.xml and .rb files).' 
     
    2626  s.add_dependency 'taverna-t2flow', '>= 0.2.0' 
    2727  s.add_dependency 't2-server', '>= 0.5.3' 
     28  s.add_dependency 'rubyzip', '>= 0.9.4' 
    2829end 
    2930 
    30 Rake::GemPackageTask.new(spec) do |p| 
     31Gem::PackageTask.new(spec) do |p| 
    3132  p.gem_spec = spec 
    3233  p.need_tar = true 
     
    3435end 
    3536 
    36 Rake::RDocTask.new do |rdoc| 
    37   files =['README', 'LICENSE', 'lib/**/*.rb'] 
     37RDoc::Task.new do |rdoc| 
     38  files =['README', 'LICENSE', 'CHANGES', 'lib/**/*.rb'] 
    3839  rdoc.rdoc_files.add(files) 
    3940  rdoc.main = "README" # page to start on 
  • galaxy-taverna/workflow-to-galaxy/README

    r130 r133  
    33 
    44Authors::     Konstantinos Karasavvas 
    5 Gem Version:: 0.2.7 
     5Gem Version:: 0.2.8 
    66Contact::     mailto:kostas.karasavvas@nbic.nl 
    77Licence::     MIT (See LICENCE or http://www.opensource.org/licenses/mit-license) 
     
    1919 
    2020The name is workflow-to-galaxy rather than t2-workflow-to-galaxy because it is 
    21 possible that it will support other workflow management system's in the future. 
     21possible that it will support other workflow management systems in the future. 
    2222 
    2323 
    2424== Installation 
    2525 
    26 [sudo] gem install workflow-to-galaxy 
     26  [sudo] gem install workflow-to-galaxy 
    2727 
    2828 
     
    3737options are: 
    3838 
    39 -o OUTPUT, --output=OUTPUT  The file name(s) of the generated tool. If it is not specified then the workflow's name will be used. 
     39  -o OUTPUT, --output=OUTPUT  The file name(s) of the generated tool. If it is not specified then the workflow's name will be used. 
    4040 
    41 -s SERVER, --server=SERVER  The taverna server that the script will request execution from. If it is not specified then "http://localhost:8980/taverna-server" will be used. 
     41  -s SERVER, --server=SERVER  The taverna server that the script will request execution from. If it is not specified then "http://localhost:8980/taverna-server" will be used. 
    4242 
    43 -t,        --t2flow         The workflow is a t2flow file. 
     43  -t,        --t2flow         The workflow is a t2flow file. 
    4444 
    4545 
     
    4949from myExperiment repository: 
    5050 
    51 <tt>$ workflow_to_galaxy  -s http://localhost:8980/taverna-server  http://www.myexperiment.org/workflows/74/download/bioaid_proteindiscovery_781733.t2flow?version=5</tt> 
     51  $ workflow_to_galaxy  -s http://localhost:8980/taverna-server  http://www.myexperiment.org/workflows/74/download/bioaid_proteindiscovery_781733.t2flow?version=5 
    5252 
    5353 
     
    5555== References 
    5656 
    57 Galaxy::       http://galaxy.psu.edu 
    58 Taverna2::     http://www.taverna.org.uk 
    59 myExperiment:: http://www.myexperiment.org 
     57Taverna-Galaxy:: https://trac.nbic.nl/elabfactory/wiki/eGalaxy 
     58Galaxy::         http://galaxy.psu.edu 
     59Taverna2::       http://www.taverna.org.uk 
     60myExperiment::   http://www.myexperiment.org 
    6061