Timeline


and

Sep 14, 2011:

5:13 PM Changeset [117] by work@…
- added views
5:13 PM Changeset [116] by work@…
- added controllers - added domain classes - added taglibs - installed …
1:49 PM Changeset [115] by work@…
- added svn ignore
1:45 PM Changeset [114] by work@…
1:43 PM Changeset [113] by work@…
- adding grails 2.0.0.M2 code
1:39 PM Changeset [112] by work@…
adding grails 2.0.0.M2 temporary dir for tryout / codesharing

Sep 12, 2011:

3:11 PM Changeset [111] by work@…
- dummy commit
1:46 PM Changeset [110] by work@…
- check for attrs key
1:29 PM Changeset [109] by s.h.sikkema@…
- correct error handling for missing id or missing assay in …
1:24 PM Changeset [108] by work@…
- adding 'files' attribute to uploadedFileList tag - created a …
12:41 PM Changeset [107] by work@…
- adding 'files' attribute to uploadedFileList tag - created a …

Sep 9, 2011:

10:49 AM Changeset [106] by m.s.vanvliet@…
Boostrap Failed, this fixed it.

Sep 8, 2011:

9:52 PM Changeset [105] by m.s.vanvliet@…
Make sure the passed ID is a Long

Sep 6, 2011:

5:25 PM Changeset [104] by work@…
- added rating (not completely done) - moved …

Sep 1, 2011:

11:17 AM Changeset [103] by work@…
- removed utf8 character

Aug 31, 2011:

10:21 AM Ticket #23 (Update Galaxy with Excel upload support) created by business@…
Right now Excel does not understand Excel files when uploaded. Can we …
10:09 AM Ticket #22 (Galaxy plot tools give an error) created by business@…
Galaxy plotting tools give the following error: […]

Aug 30, 2011:

9:38 PM Changeset [102] by m.s.vanvliet@…
Some minor improvements to the views
4:37 PM Changeset [101] by s.h.sikkema@…
- simplified assayService.getAssayReadableByUserById - made assays …
1:33 PM Ticket #21 (Improve sheet selector) created by s.h.sikkema@…
When there is only one sheet, hide selection box. When there are …
1:32 PM Ticket #20 (Improve clarity of pop-up dialog) created by s.h.sikkema@…
Right now it is probably not clear to new users what to do once they …

Aug 29, 2011:

3:24 PM Changeset [100] by m.s.vanvliet@…
Setup basic pages for Measurement{Platform{Version}}
2:47 PM Ticket #19 (When resizing the interpret data dialog, header column stays short) closed by s.h.sikkema@…
fixed
2:32 PM Ticket #18 (Debug GSCF fetch assay data from metabolomics module) closed by s.h.sikkema@…
fixed: fixed
2:24 PM Changeset [99] by s.h.sikkema@…
datatables header now resizes together with dialog disabled clicking …
12:12 PM Ticket #19 (When resizing the interpret data dialog, header column stays short) created by business@…
Bug when resizing data interpretation dialog (try it and you'll see) - …
11:26 AM Changeset [98] by s.h.sikkema@…
-fixed getmeasurements in storage - storage version to 0.2.0.2
10:51 AM Ticket #18 (Debug GSCF fetch assay data from metabolomics module) created by business@…
Currently export assay data from GSCF gives an error: […]
10:48 AM Ticket #17 (Implement /assay/showByToken) created by business@…
as in dbNP module specs, implement /assay/showByToken/<token> so that …
10:32 AM Ticket #14 (Enhancements for uploadr plugin) closed by business@…
fixed: Works great!

Aug 26, 2011:

8:30 PM Changeset [97] by m.s.vanvliet@…
Added Assay controller and Assay View action
8:28 PM Changeset [96] by m.s.vanvliet@…
Enabled link to Assay/View? page
8:24 PM Changeset [95] by m.s.vanvliet@…
In Code comment changed
8:11 PM Changeset [94] by work@…
- added uploadr 0.4.7 (new icons, improved vote handling, rating …

Aug 25, 2011:

5:58 PM Changeset [93] by work@…
- uploadr bugfix
5:34 PM Changeset [92] by work@…
- added uploadr 0.4.5 which adds support for colors, color picker, …
1:20 PM Changeset [91] by t.w.abma@…
- added documentation

Aug 24, 2011:

5:45 PM Changeset [90] by t.w.abma@…
- added green (mapped) and red colored (unmapped) eppendorf tubes …

Aug 22, 2011:

4:26 PM Ticket #16 (Improve data interpretation) created by business@…
Enhancements to data interpretation dialog: * If sample names occur …
4:17 PM Ticket #15 (Update file viewer with rating) created by business@…
This ticket depends on ticket #14. The file list is used on the main …
4:14 PM Ticket #14 (Enhancements for uploadr plugin) created by business@…
To implement functionality from the requirements doc, especially the …
4:10 PM Ticket #13 (Create assay page) created by business@…
When uploaded files are assigned to a study/assay, they should be …
4:07 PM Ticket #12 (Create a GUI for Platforms) created by business@…
A simple GUI for Platforms would enable users to browse all platforms …
4:06 PM Ticket #11 (On newly uploaded file, first show data file type chooser) created by business@…
There are three types of files in the module: - raw data - clean data …

Aug 19, 2011:

5:37 PM Changeset [89] by s.h.sikkema@…
- upgraded and adjusted for storage version 0.2.0 - sample mapping …
10:54 AM Changeset [88] by s.h.sikkema@…
added workaround for bug where saving the uploadedFile instance

Aug 18, 2011:

4:37 PM Changeset [87] by s.h.sikkema@…
fixed null pointer issue in buildSampleMappingString
4:06 PM Changeset [86] by s.h.sikkema@…
upgraded dbxpModuleBase to 0.4.3
3:50 PM Changeset [85] by s.h.sikkema@…
- showing sample mapping even after closing and reopening dialog - …
11:08 AM Ticket #7 (Personalize list of uploaded files) closed by s.h.sikkema@…
fixed: This is now the logic to determine which uploaded files to show: …
11:07 AM Ticket #6 (Error in parsing of uploaded Excel file) closed by s.h.sikkema@…
fixed
11:06 AM Ticket #5 (Serve REST calls via dbNP protocol) closed by s.h.sikkema@…
fixed: The problems that occurred during the demo are now resolved (i.e. …
11:04 AM Ticket #2 (Map the sample column of a peak list to GSCF assay samples) closed by s.h.sikkema@…
fixed: The message is still displayed after you click 'Save' but now also …

Aug 17, 2011:

3:31 PM Changeset [84] by t.w.abma@…
- removed debug statement
3:31 PM Changeset [83] by t.w.abma@…
- removed debug statement
3:30 PM Changeset [82] by t.w.abma@…
- changing between column or row wise sample orientation now updates …
2:40 PM Changeset [81] by work@…
- upgraded uploadr, mongodb, tomcat and jquery-ui plugins
11:56 AM Changeset [80] by t.w.abma@…
- changed sample column index selector, now contains list of all …

Aug 16, 2011:

3:37 PM Changeset [79] by t.w.abma@…
- fixed: when selecting an empty sheet the preview now shows no data …
12:24 PM Changeset [78] by t.w.abma@…
- added highlighting of selected sample column in parse configurator

Aug 15, 2011:

4:34 PM Changeset [77] by t.w.abma@…
- added maximum string length of cell value - fixed datatables …
3:24 PM Changeset [76] by s.h.sikkema@…
enabled REST interface for moduleStorage
11:14 AM Ticket #9 (Error when interpreting DiogenesMock.csv) closed by business@…
fixed
11:14 AM Ticket #10 (Create Galaxy tool that links to Galaxy fetch implementation in GSCF) created by business@…
https://trac.nbic.nl/gscf/ticket/357 is a prereq of this ticket.
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