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Ticket Resolution Summary Owner Reporter
#58 fixed Platform view does not show m/z as feature column name but original column name business@…
Description

In http://metabolomics.nmcdsp.org/assay/view/744?selectedTab=3

Column should read m/z instead of Mass Quan#

#57 fixed Upload of platform file with just one column fails business@…
Description

When uploading a feature file with just one column (the names), interpretation fails.

Underlying error:

2011-12-19 12:07:49,464 [http-10080-3] ERROR errors.GrailsExceptionResolver  - Exception occurred when processing request: [POST] /metabolomicsModule-0.2.0-www/parseConfiguration/handleFeatureForm
Stacktrace follows:
java.lang.IndexOutOfBoundsException: toIndex = 2
	at java.util.SubList.<init>(AbstractList.java:602)
	at java.util.RandomAccessSubList.<init>(AbstractList.java:758)
	at java.util.AbstractList.subList(AbstractList.java:468)
	at org.dbxp.metabolomicsModule.measurements.MeasurementService.createMeasurementPlatformVersion(MeasurementService.groovy:55)
	at org.dbxp.metabolomicsModule.measurements.MeasurementService$$FastClassByCGLIB$$d2717cfd.invoke(<generated>)
	at net.sf.cglib.proxy.MethodProxy.invoke(MethodProxy.java:149)
	at org.dbxp.metabolomicsModule.measurements.MeasurementService$$EnhancerByCGLIB$$36e0c4b3.createMeasurementPlatformVersion(<generated>)
	at org.dbxp.metabolomicsModule.measurements.MeasurementService$createMeasurementPlatformVersion.call(Unknown Source)
	at org.dbxp.metabolomicsModule.ParseConfigurationController$_closure7.doCall(ParseConfigurationController.groovy:187)
	at org.dbxp.metabolomicsModule.ParseConfigurationController$_closure7.doCall(ParseConfigurationController.groovy)
	at java.lang.Thread.run(Thread.java:662)
#56 worksforme Assay view does not work business@…
Description

http://metabolomics.nmcdsp.org/assay/view/744

Grails Runtime Exception
Error Details
Error 500: Error processing GroovyPageView: Error executing tag <mm:assayFeatureTables>: Unclosed character class near index 0 [ ^ at /WEB-INF/grails-app/views/assay/view.gsp:30
Servlet: grails
URI: /metabolomicsModule-0.2.0-www/grails/assay/view.dispatch
Exception Message: Unclosed character class near index 0 [ ^
Caused by: Error processing GroovyPageView: Error executing tag <mm:assayFeatureTables>: Unclosed character class near index 0 [ ^ at /WEB-INF/grails-app/views/assay/view.gsp:30
Class: MetabolomicsModuleTagLib
At Line: [204]
Code Snippet:
Stack Trace

org.codehaus.groovy.grails.web.pages.exceptions.GroovyPagesException: Error processing GroovyPageView: Error executing tag <mm:assayFeatureTables>: Unclosed character class near index 0
[
^ at /WEB-INF/grails-app/views/assay/view.gsp:30

	at java.lang.Thread.run(Thread.java:662)

Caused by: org.codehaus.groovy.grails.web.taglib.exceptions.GrailsTagException: Error executing tag <mm:assayFeatureTables>: Unclosed character class near index 0
[
^ at /WEB-INF/grails-app/views/assay/view.gsp:30

	at gsp_metabolomicsModule_assayview_gsp$_run_closure2.doCall(gsp_metabolomicsModule_assayview_gsp.groovy:39)

	at gsp_metabolomicsModule_assayview_gsp$_run_closure2.doCall(gsp_metabolomicsModule_assayview_gsp.groovy)

	at gsp_metabolomicsModule_assayview_gsp.run(gsp_metabolomicsModule_assayview_gsp.groovy:48)

	... 1 more

Caused by: java.util.regex.PatternSyntaxException: Unclosed character class near index 0
[
^

	at java.util.regex.Pattern.error(Pattern.java:1713)

	at java.util.regex.Pattern.clazz(Pattern.java:2254)

	at java.util.regex.Pattern.sequence(Pattern.java:1818)

	at java.util.regex.Pattern.expr(Pattern.java:1752)

	at java.util.regex.Pattern.compile(Pattern.java:1460)

	at java.util.regex.Pattern.<init>(Pattern.java:1133)

	at java.util.regex.Pattern.compile(Pattern.java:823)

	at java.lang.String.replaceFirst(String.java:2146)

	at org.dbxp.metabolomicsModule.identity.FeaturePropertyService.formatLabel(FeaturePropertyService.groovy:28)

	at org.dbxp.metabolomicsModule.identity.FeaturePropertyService$formatLabel.callCurrent(Unknown Source)

	at org.dbxp.metabolomicsModule.identity.FeaturePropertyService.view(FeaturePropertyService.groovy:57)

	at org.dbxp.metabolomicsModule.identity.FeaturePropertyService$$FastClassByCGLIB$$26b95f07.invoke(<generated>)

	at net.sf.cglib.proxy.MethodProxy.invoke(MethodProxy.java:149)

	at org.dbxp.metabolomicsModule.identity.FeaturePropertyService$$EnhancerByCGLIB$$4d1025a1.view(<generated>)

	at org.dbxp.metabolomicsModule.MetabolomicsModuleTagLib$_closure9.doCall(MetabolomicsModuleTagLib.groovy:290)

	at org.dbxp.metabolomicsModule.MetabolomicsModuleTagLib$_closure7_closure41.doCall(MetabolomicsModuleTagLib.groovy:249)

	at org.dbxp.metabolomicsModule.MetabolomicsModuleTagLib$_closure7.doCall(MetabolomicsModuleTagLib.groovy:247)

	at org.dbxp.metabolomicsModule.MetabolomicsModuleTagLib.invokeMethod(MetabolomicsModuleTagLib.groovy)

	at org.dbxp.metabolomicsModule.MetabolomicsModuleTagLib$_closure6_closure37.doCall(MetabolomicsModuleTagLib.groovy:206)

	at org.dbxp.metabolomicsModule.MetabolomicsModuleTagLib$_closure6.doCall(MetabolomicsModuleTagLib.groovy:204)

	... 4 more

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