Changeset 67

Timestamp:

Jun 14, 2011, 4:08:13 PM (8 years ago)

Author:

robert@…

Message:

Removed needless debug printlns

Location:

trunk

Files:

• grails-app/controllers/nl/tno/massSequencing/AssaySampleController.groovy (modified) (1 diff)
• grails-app/controllers/nl/tno/massSequencing/RunController.groovy (modified) (1 diff)
• grails-app/controllers/nl/tno/massSequencing/query/QueryController.groovy (modified) (2 diffs)
• grails-app/domain/nl/tno/massSequencing/classification/Taxon.groovy (modified) (2 diffs)
• grails-app/services/nl/tno/massSequencing/imports/FuzzySearchService.groovy (modified) (1 diff)
• grails-app/services/nl/tno/massSequencing/integration/SynchronizationService.groovy (modified) (1 diff)
• grails-app/views/import/parseUploadResult.gsp (modified) (1 diff)
• src/groovy/nl/tno/massSequencing/query/Search.groovy (modified) (1 diff)

trunk/grails-app/controllers/nl/tno/massSequencing/AssaySampleController.groovy

@@ -89 +89 @@
          */
         protected void renderSequenceLengthHistogram( String title, def assaySamples ) {
-                println "Rendering histogram for " + assaySamples?.size() + " samples";
+                log.debug "Rendering histogram for " + assaySamples?.size() + " samples";
                 
                 def numSequences = assaySamples.collect { it.numSequences() }.sum()

trunk/grails-app/controllers/nl/tno/massSequencing/RunController.groovy

@@ -515 +515 @@
                 def excelData = sampleExcelService.updateTagsByExcel( matchColumns, session.possibleFields, file, assaySamples );
 
-                println excelData
-                
                 // Return a message to the user
                 if( !excelData.success ) {

trunk/grails-app/controllers/nl/tno/massSequencing/query/QueryController.groovy

@@ -16 +16 @@
                 // Check whether criteria have been given before
                 def criteria = [];
-                println "Params: " + params.criteria
+
                 if( params.criteria ) {
                         criteria = parseCriteria( params.criteria, false )
@@ -299 +299 @@
            Search s = Search.register( name, url, entity, results );
            int searchId = saveSearch( s );
-           
-           println "Params: " + params.url
-           println "Search: " + s.url
            
            // Redirect to the search screen

trunk/grails-app/domain/nl/tno/massSequencing/classification/Taxon.groovy

@@ -176 +176 @@
                 def leafName = path[ -1 ];
                 
-                
-                println "Searching for " + path;
-                
                 // Find all taxa that match the given leafnode
                 def leafs = Taxon.findAll(
@@ -184 +181 @@
                         [ 'name': leafName, 'level': leafLevel ]
                 )
-                
-                println "Leafs found: " + leafs*.name
                 
                 // If none is found, return null

trunk/grails-app/services/nl/tno/massSequencing/imports/FuzzySearchService.groovy

@@ -15 +15 @@
          */
         static def mostSimilarUnique( patterns, candidates, treshold ) {
-                println "Patterns: " + patterns.findAll { it };
-                println "Candidates: " + candidates;
-                
                 def matches = []
                 

trunk/grails-app/services/nl/tno/massSequencing/integration/SynchronizationService.groovy

@@ -148 +148 @@
                                         studyTokens = [studyTokens];
                                 }
-                                println "Only updating studies with tokens " + studyTokens.join( ',' );
+
                                 newStudies = gscfService.getStudies(sessionToken, studyTokens)
                         } else {

trunk/grails-app/views/import/parseUploadResult.gsp

@@ -171 +171 @@
                 </g:if>
 
-        <input type="submit" value="Continue">
+                <g:if test="${remainingClassificationFiles || matchedFiles.size() > 0}">
+                        <input type="submit" value="Continue">
+                </g:if>
         </g:form>
 

trunk/src/groovy/nl/tno/massSequencing/query/Search.groovy

@@ -172 +172 @@
                                                 ( hql.having ? " HAVING " + hql.having.join( " " + searchMode.toString() + " " ) : "" )
                 
-                println "Query: " + hqlQuery;
-                println "Parameters: " + hql.parameters;
-                                                
                 // Find all objects 
                 def entities = Sample.executeQuery( hqlQuery, hql.parameters );