Changeset 67
- Timestamp:
- Jun 14, 2011, 4:08:13 PM (12 years ago)
- Location:
- trunk
- Files:
-
- 8 edited
Legend:
- Unmodified
- Added
- Removed
-
trunk/grails-app/controllers/nl/tno/massSequencing/AssaySampleController.groovy
r63 r67 89 89 */ 90 90 protected void renderSequenceLengthHistogram( String title, def assaySamples ) { 91 println"Rendering histogram for " + assaySamples?.size() + " samples";91 log.debug "Rendering histogram for " + assaySamples?.size() + " samples"; 92 92 93 93 def numSequences = assaySamples.collect { it.numSequences() }.sum() -
trunk/grails-app/controllers/nl/tno/massSequencing/RunController.groovy
r63 r67 515 515 def excelData = sampleExcelService.updateTagsByExcel( matchColumns, session.possibleFields, file, assaySamples ); 516 516 517 println excelData518 519 517 // Return a message to the user 520 518 if( !excelData.success ) { -
trunk/grails-app/controllers/nl/tno/massSequencing/query/QueryController.groovy
r66 r67 16 16 // Check whether criteria have been given before 17 17 def criteria = []; 18 println "Params: " + params.criteria 18 19 19 if( params.criteria ) { 20 20 criteria = parseCriteria( params.criteria, false ) … … 299 299 Search s = Search.register( name, url, entity, results ); 300 300 int searchId = saveSearch( s ); 301 302 println "Params: " + params.url303 println "Search: " + s.url304 301 305 302 // Redirect to the search screen -
trunk/grails-app/domain/nl/tno/massSequencing/classification/Taxon.groovy
r63 r67 176 176 def leafName = path[ -1 ]; 177 177 178 179 println "Searching for " + path;180 181 178 // Find all taxa that match the given leafnode 182 179 def leafs = Taxon.findAll( … … 184 181 [ 'name': leafName, 'level': leafLevel ] 185 182 ) 186 187 println "Leafs found: " + leafs*.name188 183 189 184 // If none is found, return null -
trunk/grails-app/services/nl/tno/massSequencing/imports/FuzzySearchService.groovy
r52 r67 15 15 */ 16 16 static def mostSimilarUnique( patterns, candidates, treshold ) { 17 println "Patterns: " + patterns.findAll { it };18 println "Candidates: " + candidates;19 20 17 def matches = [] 21 18 -
trunk/grails-app/services/nl/tno/massSequencing/integration/SynchronizationService.groovy
r63 r67 148 148 studyTokens = [studyTokens]; 149 149 } 150 println "Only updating studies with tokens " + studyTokens.join( ',' ); 150 151 151 newStudies = gscfService.getStudies(sessionToken, studyTokens) 152 152 } else { -
trunk/grails-app/views/import/parseUploadResult.gsp
r59 r67 171 171 </g:if> 172 172 173 <input type="submit" value="Continue"> 173 <g:if test="${remainingClassificationFiles || matchedFiles.size() > 0}"> 174 <input type="submit" value="Continue"> 175 </g:if> 174 176 </g:form> 175 177 -
trunk/src/groovy/nl/tno/massSequencing/query/Search.groovy
r66 r67 172 172 ( hql.having ? " HAVING " + hql.having.join( " " + searchMode.toString() + " " ) : "" ) 173 173 174 println "Query: " + hqlQuery;175 println "Parameters: " + hql.parameters;176 177 174 // Find all objects 178 175 def entities = Sample.executeQuery( hqlQuery, hql.parameters );
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