Changeset 28 for trunk/grails-app
- Timestamp:
- Apr 5, 2011, 3:58:56 PM (11 years ago)
- Location:
- trunk/grails-app/domain/nl/tno/metagenomics
- Files:
-
- 8 edited
Legend:
- Unmodified
- Added
- Removed
-
trunk/grails-app/domain/nl/tno/metagenomics/Assay.groovy
r7 r28 1 package nl.tno.m etagenomics1 package nl.tno.massSequencing 2 2 3 3 /** -
trunk/grails-app/domain/nl/tno/metagenomics/AssaySample.groovy
r24 r28 1 package nl.tno.m etagenomics1 package nl.tno.massSequencing 2 2 3 3 /** … … 226 226 // in a 'deleted object would be re-saved by cascade' exception 227 227 228 // Clone the sequencedata object 229 def sd = dataList[ j ]?.clone(); 230 231 if( sd ) 232 otherAssaySample.addToSequenceData( sd ); 228 if( dataList[ j ] ) { 229 // Clone the sequencedata object 230 def sd = dataList[ j ]?.clone(); 233 231 234 // Remove the old sequencedata object 235 this.removeFromSequenceData( dataList[ j ] ); 232 if( sd ) 233 otherAssaySample.addToSequenceData( sd ); 234 235 // Remove the old sequencedata object 236 this.removeFromSequenceData( dataList[ j ] ); 237 } 236 238 } 237 239 } -
trunk/grails-app/domain/nl/tno/metagenomics/Run.groovy
r26 r28 1 package nl.tno.m etagenomics1 package nl.tno.massSequencing 2 2 3 import nl.tno.m etagenomics.auth.User3 import nl.tno.massSequencing.auth.User 4 4 import org.codehaus.groovy.grails.commons.ConfigurationHolder 5 5 … … 38 38 // Remove the file if the object is deleted 39 39 if( this.parameterFile ) 40 fileService.delete( this.parameterFile, fileService.absolutePath( ConfigurationHolder.config.m etagenomics.fileDir ) )40 fileService.delete( this.parameterFile, fileService.absolutePath( ConfigurationHolder.config.massSequencing.fileDir ) ) 41 41 } 42 42 … … 61 61 fileService.get( params.parameterFile ), 62 62 "", 63 fileService.absolutePath( ConfigurationHolder.config.m etagenomics.fileDir )63 fileService.absolutePath( ConfigurationHolder.config.massSequencing.fileDir ) 64 64 ); 65 65 } -
trunk/grails-app/domain/nl/tno/metagenomics/Sample.groovy
r9 r28 1 package nl.tno.m etagenomics1 package nl.tno.massSequencing 2 2 3 3 /** -
trunk/grails-app/domain/nl/tno/metagenomics/SequenceData.groovy
r20 r28 1 package nl.tno.m etagenomics1 package nl.tno.massSequencing 2 2 3 3 import org.codehaus.groovy.grails.commons.ConfigurationHolder … … 48 48 49 49 def beforeDelete = { 50 def permanentDir = fileService.absolutePath( ConfigurationHolder.config.m etagenomics.fileDir.toString() )50 def permanentDir = fileService.absolutePath( ConfigurationHolder.config.massSequencing.fileDir.toString() ) 51 51 if( sequenceFile ) { 52 52 fileService.delete( sequenceFile, permanentDir ) … … 62 62 public SequenceData clone() { 63 63 // Copy the files to a new name 64 def permanentDir = fileService.absolutePath( ConfigurationHolder.config.m etagenomics.fileDir.toString() )64 def permanentDir = fileService.absolutePath( ConfigurationHolder.config.massSequencing.fileDir.toString() ) 65 65 66 66 def newSequenceFileName = sequenceFile; -
trunk/grails-app/domain/nl/tno/metagenomics/Study.groovy
r7 r28 1 package nl.tno.m etagenomics1 package nl.tno.massSequencing 2 2 3 import nl.tno.m etagenomics.auth.*;3 import nl.tno.massSequencing.auth.*; 4 4 5 5 /** -
trunk/grails-app/domain/nl/tno/metagenomics/auth/Auth.groovy
r2 r28 1 package nl.tno.m etagenomics.auth1 package nl.tno.massSequencing.auth 2 2 3 import nl.tno.m etagenomics.Study3 import nl.tno.massSequencing.Study 4 4 5 5 /** -
trunk/grails-app/domain/nl/tno/metagenomics/auth/User.groovy
r16 r28 1 package nl.tno.m etagenomics.auth1 package nl.tno.massSequencing.auth 2 2 3 import nl.tno.m etagenomics.Study3 import nl.tno.massSequencing.Study 4 4 5 5 /*
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