| 1 | <html> |
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| 2 | <head> |
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| 3 | <meta name="layout" content="main" /> |
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| 4 | <title>View trashcan | Metagenomics | dbNP</title> |
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| 5 | <g:javascript src="trash.js" /> |
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| 6 | </head> |
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| 7 | <body> |
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| 8 | <h1>List of assays in the trashcan</h1> |
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| 9 | <g:if test="${studies.size() == 0}"> |
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| 10 | <p>Currently the trashcan is empty.</p> |
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| 11 | </g:if> |
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| 12 | <g:else> |
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| 13 | <table class="paginate"> |
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| 14 | <thead> |
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| 15 | <tr> |
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| 16 | <th>Type</th> |
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| 17 | <th>Name</th> |
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| 18 | <th># samples</th> |
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| 19 | <th># sequences</th> |
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| 20 | <th>Tag sequence</th> |
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| 21 | <th>Oligo number</th> |
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| 22 | <th>Files</th> |
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| 23 | <th class="nonsortable"></th> |
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| 24 | <th class="nonsortable"></th> |
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| 25 | </tr> |
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| 26 | </thead> |
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| 27 | <tbody> |
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| 28 | <g:each in="${trashStudies}" var="study"> |
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| 29 | <g:if test="${study.assays != null && study.assays.size() > 0}"> |
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| 30 | <g:each in="${study.assays}" var="assay"> |
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| 31 | <tr> |
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| 32 | <td>Assay</td> |
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| 33 | <td> |
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| 34 | ${assay.name} |
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| 35 | </td> |
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| 36 | <td> |
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| 37 | ${assay.assaySamples?.size()} |
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| 38 | </td> |
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| 39 | <td> |
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| 40 | ${assay.numSequences()} |
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| 41 | </td> |
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| 42 | <td>-</td> |
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| 43 | <td>-</td> |
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| 44 | <td> |
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| 45 | ${assay.numFiles()} |
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| 46 | </td> |
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| 47 | <td align="center"><a href="#" onClick="restAssay('${assay.id}'); return false;" title="Restore assay"><img src="${fam.icon(name:'arrow_redo')}" alt="Restore assay"></a></td> |
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| 48 | <td align="center"><g:link action="deleteAssay" id="${assay.id}" onClick="return confirm( 'Are you sure you want to delete this assay and all its data forever?' );" title="Delete assay forever"><img src="${fam.icon(name:'delete')}" alt="Delete assay forever"></g:link></td> |
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| 49 | </tr> |
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| 50 | <% def assaysamples = assay.assaySamples.sort { a, b -> a.sample.name <=> b.sample.name } %> |
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| 51 | <g:each in="${assaysamples}" var="assaysample"> |
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| 52 | <tr> |
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| 53 | <td>Sample</td> |
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| 54 | <td> |
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| 55 | ${assaysample.sample.name} |
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| 56 | </td> |
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| 57 | <td></td> |
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| 58 | <td> |
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| 59 | ${assaysample.numSequences()} |
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| 60 | </td> |
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| 61 | <td> |
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| 62 | ${assaysample.tagSequence} |
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| 63 | </td> |
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| 64 | <td> |
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| 65 | ${assaysample.oligoNumber} |
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| 66 | </td> |
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| 67 | <td> |
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| 68 | <g:each in="${assaysample.sequenceData}" var="data"> |
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| 69 | <g:uploadedFile value="${data.sequenceFile}" />, |
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| 70 | <g:uploadedFile value="${data.qualityFile}" />, |
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| 71 | </g:each> |
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| 72 | </td> |
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| 73 | <td align="center"><a href="#" onClick="restSample(${assaysample.id}); return false;" title="Restore sample"><img src="${fam.icon(name:'arrow_redo')}" alt="Restore sample"></a></td> |
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| 74 | <td align="center"><g:link action="deleteSample" id="${assaysample.id}" onClick="return confirm( 'Are you sure you want to delete this sample and all its data forever?' );" title="Delete sample forever"><img src="${fam.icon(name:'delete')}" alt="Delete sample forever"></g:link></td> |
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| 75 | </tr> |
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| 76 | </g:each> |
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| 77 | </g:each> |
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| 78 | </g:if> |
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| 79 | </g:each> |
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| 80 | </tbody> |
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| 81 | </table> |
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| 82 | |
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| 83 | <div id="restoreAssayDialog" class="dialog"> |
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| 84 | <g:form name="restoreAssay" action="restoreAssay"> |
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| 85 | <p> |
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| 86 | You can restore the data of this assay. Please choose which existing assay this data belongs to. The |
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| 87 | system will try to match the names of the samples in the trashcan with the samples in the assay you choose. |
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| 88 | </p> |
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| 89 | <select name="restoreTo"> |
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| 90 | <g:each in="${studies}" var="study"> |
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| 91 | <g:if test="${study.assays != null && study.assays.size() > 0}"> |
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| 92 | <g:each in="${study.assays}" var="assay"> |
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| 93 | <g:if test="${assay.assaySamples != null && assay.assaySamples.size() > 0}"> |
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| 94 | <option value="${assay.id}">${study.name} - ${assay.name}</option> |
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| 95 | </g:if> |
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| 96 | </g:each> |
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| 97 | </g:if> |
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| 98 | </g:each> |
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| 99 | </select> |
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| 100 | </g:form> |
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| 101 | </div> |
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| 102 | <div id="restoreSampleDialog" class="dialog"> |
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| 103 | <g:form name="restoreSample" action="restoreSample"> |
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| 104 | <p> |
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| 105 | You can restore the data of this sample. Please choose which existing sample this data belongs to. |
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| 106 | </p> |
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| 107 | <select name="restoreTo"> |
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| 108 | <g:each in="${studies}" var="study"> |
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| 109 | <g:if test="${study.assays != null && study.assays.size() > 0}"> |
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| 110 | <g:each in="${study.assays}" var="assay"> |
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| 111 | <g:if test="${assay.assaySamples != null && assay.assaySamples.size() > 0}"> |
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| 112 | <optgroup label="${study.name.encodeAsHTML()} - ${assay.name?.encodeAsHTML()}"> |
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| 113 | <g:each in="${assay.assaySamples}" var="assaysample"> |
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| 114 | <option value="${assaysample.id}">${assaysample.sample.name}</option> |
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| 115 | </g:each> |
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| 116 | </optgroup> |
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| 117 | </g:if> |
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| 118 | </g:each> |
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| 119 | </g:if> |
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| 120 | </g:each> |
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| 121 | </select> |
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| 122 | </g:form> |
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| 123 | </div> |
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| 124 | </g:else> |
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| 125 | </body> |
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| 126 | </html> |
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