| 1 | <html> |
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| 2 | <head> |
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| 3 | <meta name="layout" content="main" /> |
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| 4 | <title>List runs | Mass Sequencing | dbNP</title> |
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| 5 | <link rel="stylesheet" href="<g:resource dir="css" file="fileuploader.new.css" />" type="text/css"/> |
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| 6 | <g:javascript src="run.index.runDialog.js" /> |
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| 7 | |
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| 8 | <g:javascript src="fileuploads.new.js" /> |
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| 9 | |
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| 10 | <script type="text/javascript"> |
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| 11 | // Create a variable with assay names to check for existing names |
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| 12 | var runNames = []; |
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| 13 | <g:each in="${runs}" var="run"> |
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| 14 | runNames[ runNames.length ] = {id: ${run.id}, name: '${run.name}', alreadyAdded: false}; |
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| 15 | </g:each> |
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| 16 | </script> |
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| 17 | </head> |
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| 18 | <body> |
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| 19 | <h1>List of mass sequencing runs</h1> |
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| 20 | <g:if test="${runs.size() == 0}"> |
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| 21 | <p> |
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| 22 | Currently there are no runs available in the database. Click <a href="#" onClick="showAddRunDialog(); return false;">here</a> to add a new run. |
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| 23 | </p> |
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| 24 | </g:if> |
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| 25 | <g:else> |
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| 26 | <form id="runForm"> |
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| 27 | </form> |
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| 28 | <table id="runs" class="paginate"> |
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| 29 | <thead> |
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| 30 | <tr> |
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| 31 | <th width="5" class="nonsortable"><input type="checkbox" id="checkAll" onClick="checkAllPaginated(this);" /></th> |
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| 32 | <th width="49%" >Run</th> |
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| 33 | <th width="15%"># samples</th> |
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| 34 | <th width="15%"># sequences</th> |
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| 35 | <th width="5" class="nonsortable"></th> |
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| 36 | <th width="5" class="nonsortable"></th> |
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| 37 | <th width="5" class="nonsortable"></th> |
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| 38 | </tr> |
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| 39 | </thead> |
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| 40 | <tbody> |
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| 41 | <g:each in="${runs}" var="run"> |
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| 42 | <tr> |
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| 43 | <td><g:checkBox name="ids" value="${run.id}" checked="${false}" onClick="updateCheckAll(this);" /></td> |
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| 44 | <td><g:link controller="run" action="show" id="${run.id}">${run.name}</g:link></td> |
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| 45 | <td>${run.assaySamples?.size()}</td> |
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| 46 | <td>${run.numSequences()}</td> |
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| 47 | <td><g:link controller="run" action="show" id="${run.id}"><img src="${fam.icon( name: 'application_form_magnify' )}" alt="view" title="view" /></g:link></td> |
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| 48 | <td> |
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| 49 | <g:if test="${run.deletable(user)}"> |
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| 50 | <g:link onClick="return confirm( 'Are you sure you want to delete this run?' );" controller="run" action="deleteRun" id="${run.id}"><img src="${fam.icon( name: 'delete' )}" alt="delete" title="delete" /></g:link> |
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| 51 | </g:if> |
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| 52 | <g:else> |
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| 53 | <img src="${fam.icon( name: 'delete' )}" class="disabled" alt="Run can not be deleted because data is associated with it." title="Run can not be deleted because data is associated with it." /> |
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| 54 | </g:else> |
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| 55 | </td> |
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| 56 | <td> |
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| 57 | <g:if test="${run.numSequences() > 0}"> |
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| 58 | <g:link controller="run" action="sequenceLengthHistogram" id="${run.id}"><img src="${fam.icon( name: 'chart_bar' )}" alt="Sequence length histogram" title="Sequence length histogram" /></g:link> |
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| 59 | </g:if> |
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| 60 | <g:else> |
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| 61 | <img src="${fam.icon( name: 'chart_bar' )}" class="disabled" alt="No histogram available because no sequences are uploaded." title="No histogram available because no sequences are uploaded." /> |
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| 62 | </g:else> |
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| 63 | </td> |
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| 64 | </tr> |
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| 65 | </g:each> |
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| 66 | </tbody> |
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| 67 | </table> |
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| 68 | <p class="options"> |
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| 69 | <a class="add" href="#" onClick="showAddRunDialog(); return false;">Add run</a> |
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| 70 | <a class="fasta" href="#" onClick="submitPaginatedForm( $( '#runForm' ), '<g:createLink action="exportAsFasta" />', '#runs', 'Please select a run to export' ); return false;">Export as fasta</a> |
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| 71 | <a class="excel" href="#" onClick="submitPaginatedForm( $( '#runForm' ), '<g:createLink action="exportMetaData" />', '#runs', 'Please select a run to export' ); return false;">Export metadata</a> |
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| 72 | </p> |
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| 73 | </g:else> |
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| 74 | <g:render template="addRunDialog" /> |
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| 75 | </body> |
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| 76 | </html> |
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