| 1 | <html> |
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| 2 | <head> |
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| 3 | <meta name="layout" content="main" /> |
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| 4 | <title>List runs | Metagenomics | dbNP</title> |
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| 5 | <link rel="stylesheet" href="<g:resource dir="css" file="fileuploader.new.css" />" type="text/css"/> |
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| 6 | <g:javascript src="run.index.runDialog.js" /> |
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| 7 | |
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| 8 | <g:javascript src="fileuploader.new.js" /> |
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| 9 | <g:javascript src="fileuploads.new.js" /> |
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| 10 | |
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| 11 | <script type="text/javascript"> |
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| 12 | // Create a variable with assay names to check for existing names |
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| 13 | var runNames = []; |
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| 14 | <g:each in="${runs}" var="run"> |
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| 15 | runNames[ runNames.length ] = {id: ${run.id}, name: '${run.name}', alreadyAdded: false}; |
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| 16 | </g:each> |
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| 17 | </script> |
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| 18 | </head> |
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| 19 | <body> |
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| 20 | <h1>List of metagenomics runs</h1> |
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| 21 | <g:if test="${runs.size() == 0}"> |
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| 22 | <p> |
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| 23 | Currently there are no studies available in the database. Click <a href="#" onClick="showAddRunDialog(); return false;">here</a> to add a new run. |
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| 24 | </p> |
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| 25 | </g:if> |
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| 26 | <g:else> |
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| 27 | <form id="runForm"> |
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| 28 | </form> |
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| 29 | <table id="runs" class="paginate"> |
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| 30 | <thead> |
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| 31 | <tr> |
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| 32 | <th class="nonsortable"><input type="checkbox" id="checkAll" onClick="checkAllPaginated(this);" /></th> |
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| 33 | <th>Run</th> |
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| 34 | <th># samples</th> |
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| 35 | <th># sequences</th> |
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| 36 | </tr> |
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| 37 | </thead> |
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| 38 | <tbody> |
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| 39 | <g:each in="${runs}" var="run"> |
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| 40 | <tr> |
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| 41 | <td><g:checkBox name="ids" value="${run.id}" checked="${false}" onClick="updateCheckAll(this);" /></td> |
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| 42 | <td><g:link controller="run" action="show" id="${run.id}">${run.name}</g:link></td> |
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| 43 | <td>${run.assaySamples?.size()}</td> |
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| 44 | <td>${run.numSequences()}</td> |
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| 45 | </tr> |
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| 46 | </g:each> |
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| 47 | </tbody> |
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| 48 | </table> |
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| 49 | <p class="options"> |
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| 50 | <a class="add" href="#" onClick="showAddRunDialog(); return false;">Add run</a> |
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| 51 | <a class="fasta" href="#" onClick="submitPaginatedForm( $( '#runForm' ), '<g:createLink action="exportAsFasta" />', '#runs', 'Please select a run to export' ); return false;">Export as fasta</a> |
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| 52 | <a class="excel" href="#" onClick="submitPaginatedForm( $( '#runForm' ), '<g:createLink action="exportMetaData" />', '#runs', 'Please select a run to export' ); return false;">Export metadata</a> |
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| 53 | </p> |
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| 54 | </g:else> |
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| 55 | <g:render template="addRunDialog" /> |
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| 56 | </body> |
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| 57 | </html> |
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