source: trunk/grails-app/conf/Config.groovy

// ##################################################################################
// DO NOT Change these settings!!! 
// You can overwrite them by adding your own configuration file in ~/.grails/[environment]-[appName].properties 

// locations to search for config files that get merged into the main config
// config files can either be Java properties files or ConfigSlurper scripts
grails.config.locations = [
        // the default per-environment configuration
        // (e.g. grails-app/conf/config-development.properties)
        "classpath:config-${grails.util.GrailsUtil.environment}.properties",
        "file:${ basedir }/grails-app/conf/config-${grails.util.GrailsUtil.environment}.properties",
        "classpath:config-${grails.util.GrailsUtil.environment}.groovy",
        
        // the external configuration to override the default
        // configuration (e.g. ~/.grails-config/ci-gscf.properties)
        "file:${userHome}/.grails-config/${grails.util.GrailsUtil.environment}-${appName}.properties",
        "file:${userHome}/.grails-config/${grails.util.GrailsUtil.environment}-${appName}.groovy",
        "file:${userHome}/.grails/${grails.util.GrailsUtil.environment}-${appName}.properties",
        "file:${userHome}/.grails/${grails.util.GrailsUtil.environment}-${appName}.groovy"
]

// Add extra location if desired
if(System.properties["${appName}.config.location"]) {
        grails.config.locations << "file:" + System.properties["${appName}.config.location"]
}

// Whether to synchronize with gscf or not. By default, synchronization is turned on
massSequencing.synchronization = true

// By default, Metagenomics only fetches studies that have been changed by GSCF. GSCF sends
// notifications to the module, when something changes. However, it is possible that these messages
// can't be delivered or some other error happens. In that case, the data in the module is out of sync.
// To prevent that, every now and then a complete synchronization is performed. The frequency of this
// operation can be set by the following parameter. The parameter determines the number of seconds
// between two consecutive full synchronizations. Setting it to zero disables full synchronization, but
// is strongly discouraged.
massSequencing.fullSynchronization = 24 * 3600 // 1 day

// Temporary directory to upload files to.
// If the directory is given relative (e.g. 'fileuploads/temp'), it is taken relative to the web-app directory
// Otherwise, it should be given as an absolute path (e.g. '/home/user/sequences')
// The directory should be writable by the webserver user
massSequencing.fileUploadDir = "fileuploads/temp"

// Maximum age that uploaded files should be kept on the server before deleting them. When a user uploads a file,
// but doesn't process the file (e.g. because he leaves the page beforehand or his computer crashes), the files
// remain in the upload directory. This mechanism ensures that the upload directory is cleaned after some time.
// The time is given in seconds.
massSequencing.fileUploadMaxAge = 24 * 3600 // 1 day

// Directory to save the uploaded files permanently
// If the directory is given relative (e.g. 'fileuploads/temp'), it is taken relative to the web-app directory
// Otherwise, it should be given as an absolute path (e.g. '/home/user/sequences')
// The directory should be writable by the webserver user
massSequencing.fileDir = "fileuploads/permanent"

// Filename of the (.fna, .qual and .oligos) files that are exported
// Only the part before the extension is mentioned. If you enter "sequences", the exported files will be
// sequences.fna, sequences.qual and sequences.oligos
massSequencing.exportFilename = "1.TCA.454Reads"

// Path in GSCF that is used after baseURL for adding a new study
gscf.addStudyPath = "/simpleWizard"
gscf.registerSearchPath = "/advancedQuery/refineExternal"

grails.project.groupId = appName // change this to alter the default package name and Maven publishing destination
grails.mime.file.extensions = true // enables the parsing of file extensions from URLs into the request format
grails.mime.use.accept.header = false
grails.mime.types = [ html: ['text/html','application/xhtml+xml'],
                      xml: ['text/xml', 'application/xml'],
                      text: 'text/plain',
                      js: 'text/javascript',
                      rss: 'application/rss+xml',
                      atom: 'application/atom+xml',
                      css: 'text/css',
                      csv: 'text/csv',
                      all: '*/*',
                      json: ['application/json','text/json'],
                      form: 'application/x-www-form-urlencoded',
                      multipartForm: 'multipart/form-data'
                    ]

// URL Mapping Cache Max Size, defaults to 5000
//grails.urlmapping.cache.maxsize = 1000

// The default codec used to encode data with ${}
grails.views.default.codec = "none" // none, html, base64
grails.views.gsp.encoding = "UTF-8"
grails.converters.encoding = "UTF-8"

// enable Sitemesh preprocessing of GSP pages
grails.views.gsp.sitemesh.preprocess = true

// Set to false to use the new Grails 1.2 JSONBuilder in the render method
grails.json.legacy.builder = false

// enabled native2ascii conversion of i18n properties files
grails.enable.native2ascii = true

// whether to install the java.util.logging bridge for sl4j. Disable for AppEngine!
grails.logging.jul.usebridge = true

// packages to include in Spring bean scanning
grails.spring.bean.packages = []

// log4j configuration
log4j = {
    // Example of changing the log pattern for the default console
    // appender:
    //
    //appenders {
    //    console name:'stdout', layout:pattern(conversionPattern: '%c{2} %m%n')
    //}

//      appenders {
//              file name:'file', file:'/home/robert/tmp/profiler.log'
//              file name:'sqlfile', file:'/home/robert/tmp/sql.log'
//      }
        
        trace   'grails.app'
        
    error  'org.codehaus.groovy.grails.web.servlet',  //  controllers
           'org.codehaus.groovy.grails.web.pages', //  GSP
           'org.codehaus.groovy.grails.web.sitemesh', //  layouts
           'org.codehaus.groovy.grails.web.mapping.filter', // URL mapping
           'org.codehaus.groovy.grails.web.mapping', // URL mapping
           'org.codehaus.groovy.grails.commons', // core / classloading
           'org.codehaus.groovy.grails.plugins', // plugins
           'org.codehaus.groovy.grails.orm.hibernate', // hibernate integration
           'org.springframework',
           'org.hibernate',
           'net.sf.ehcache.hibernate'
                   
    warn   'org.mortbay.log'
        
        //info  file: 'com.linkedin.grails'     
        //trace sqlfile: 'org.hibernate.SQL'
}

// jquery plugin
grails.views.javascript.library = "jquery"
jquery.version = '1.4.4'