source: trunk

Revision Log Mode:


Legend:

Added
Modified
Copied or renamed
Diff Rev Age Author Log Message
(edit) @1484   6 years david.van.enckevort * Changed id in the distributionManagement to point to the DTL server.
(edit) @1483   6 years david.van.enckevort * Changed distributionManagement to point to the DTL server.
(edit) @1482   6 years eelkevanderhorst Disabled validation checks to avoid Unlogged exceptions being thrown …
(edit) @1481   6 years kees.burger Fixed checkstyle issues.
(edit) @1480   6 years eelkevanderhorst Changed some spring annotations/wiring.
(edit) @1479   6 years eelkevanderhorst Changed some spring annotations/wiring.
(edit) @1478   6 years kees.burger Fixed checkstyle issues.
(edit) @1477   6 years eelkevanderhorst Implemented skeleton importer classes for ChemSpider? import "new …
(edit) @1476   6 years kees.burger [maven-release-plugin] prepare for next development iteration
(edit) @1474   6 years kees.burger [maven-release-plugin] prepare release 0.9.3
(edit) @1473   6 years kees.burger Added missing license header.
(edit) @1472   6 years kees.burger Added additional query special character escaping.
(edit) @1471   6 years eelkevanderhorst Added Enzyme Branch number.
(edit) @1468   6 years david.van.enckevort * Fixed destination branch.
(edit) @1467   6 years david.van.enckevort * Changed the tagging importer to update the branch given in the …
(edit) @1466   6 years freek.de.bruijn - ConceptController?: added json mapper and createConcept method with …
(edit) @1465   6 years david.van.enckevort - Set the tag in the configuration to "Phenomenon or Process"
(edit) @1464   6 years kees.burger Changed to the correct system property for user name retrieval. Minor …
(edit) @1463   6 years kees.burger Fixed superfluous argument
(edit) @1462   7 years david.van.enckevort - Added support for querying concepts by Label, PreferredLabel? or Notation.
(edit) @1461   7 years kees.burger Fixed manual rdf output
(edit) @1460   7 years david.van.enckevort - Added support for a list of notations. - Added the WP list of UUIDs …
(edit) @1459   7 years david.van.enckevort Add an importer that adds a tag to a list of concepts.
(edit) @1458   7 years kees.burger Added missing license header.
(edit) @1457   7 years kees.burger Skeleton for the new import api
(edit) @1456   7 years kees.burger Added enzyme branch to the sql bootstrap.
(edit) @1455   7 years kees.burger Fixed a whopping 1 letter typo.
(edit) @1454   7 years kees.burger Implemented a proper way to shutdown the executor.
(edit) @1453   7 years kees.burger Added enzyme branch
(edit) @1452   7 years kees.burger Renamed enzyme context file to the format expected by the …
(edit) @1451   7 years kees.burger Disabled lines to satisfy findbugs.
(edit) @1450   7 years kees.burger Fixed some checkstyle issues.
(edit) @1449   7 years kees.burger Fixed typo in javadoc for UUIDConceptResolver. Added enzyme importer draft.
(edit) @1448   7 years eelkevanderhorst Implemented basics of Chembl Target Classification ConceptIterator? + …
(edit) @1447   7 years david.van.enckevort [maven-release-plugin] prepare for next development iteration
(edit) @1445   7 years david.van.enckevort [maven-release-plugin] prepare release 0.9.2
(edit) @1444   7 years kees.burger Fixed checkstyle errors (updated editor didn't honor the old settings)
(edit) @1443   7 years kees.burger Added toString methods for the domain
(edit) @1442   7 years david.vanenckevort * Handle null for the set of the notations and added logging.
(edit) @1441   7 years david.vanenckevort * Added default logback configuration.
(edit) @1440   7 years david.vanenckevort * Added support for creating tags to the loader and use that instead …
(edit) @1439   7 years david.vanenckevort * Updated test for changed resolver.
(edit) @1438   7 years david.vanenckevort * Updated test for changed resolver.
(edit) @1437   7 years david.vanenckevort * Fixed null pointer expection by using the correct resolver. * …
(edit) @1436   7 years david.vanenckevort * Added missing javadoc comment.
(edit) @1435   7 years david.vanenckevort * Replace underscore with colon in the Pathway Ontology notations.
(edit) @1434   7 years david.vanenckevort * Add missing wiring of the RDFHandler.
(edit) @1433   7 years david.vanenckevort * Changed autowiring of extractor to explicit wiring to solve issue …
(edit) @1432   7 years david.vanenckevort * Fixed errors in wp_po.tll syntax.
(edit) @1431   7 years david.vanenckevort * Remove check for static field by name.
(edit) @1430   7 years david.vanenckevort * Fixed logic in Unique*ConceptResolver? * Fixed LinksetRDFHandler …
(edit) @1429   7 years david.vanenckevort * Corrected merged linkset for the mapping of wp 2 po.
(edit) @1428   7 years david.vanenckevort * Changed step two to have the data extraction in the logically right …
(edit) @1427   7 years kees.burger Generated files from the /src/main/groovy scripts
(edit) @1426   7 years david.vanenckevort * Added license header.
(edit) @1425   7 years kees.burger findbugs warning, null dereference
(edit) @1424   7 years kees.burger set of scripts to convert/handle/extract annotations from the …
(edit) @1423   7 years david.vanenckevort * Rewritten step 2 of WikiPathway? importer to match the flow as discussed.
(edit) @1422   7 years freek.de.bruijn - WikiPathwaysNSSTransformerUnitTest: created two unit tests for the …
(edit) @1421   7 years david.vanenckevort * Print concept per branch.
(edit) @1420   7 years david.vanenckevort * Added option to retrieve concept by uuid to the commandline.
(edit) @1419   7 years david.vanenckevort * Fixed findbug warning.
(edit) @1418   7 years david.vanenckevort * Extended logging for the UniquePreferredLabelConceptResolver? to …
(edit) @1417   7 years kees.burger fixed checkstyle issues
(edit) @1416   7 years kees.burger added fixes and additional log messages
(edit) @1415   7 years david.vanenckevort * Log failure to create concepts if a duplicate label was found when …
(edit) @1414   7 years kees.burger Added missing license
(edit) @1413   7 years freek.de.bruijn - WikiPathwaysDataSource?: fixed some issues by refactoring the …
(edit) @1412   7 years freek.de.bruijn - Fixed a Checkstyle issue (same string was used twice).
(edit) @1411   7 years freek.de.bruijn - WikiPathwaysNSSTransformer: check for no notations in the …
(edit) @1410   7 years freek.de.bruijn - Fixed a FindBugs? issue. - Fixed several Checkstyle issues.
(edit) @1409   7 years kees.burger Refactored the process of retrieving a nss concept
(edit) @1408   7 years david.vanenckevort * Added comments to the code to indicate the problems * Added split up …
(edit) @1407   7 years freek.de.bruijn Modified branch ID comparison in findCrippledCommunityConcepts …
(edit) @1406   7 years freek.de.bruijn Fixed the license header.
(edit) @1405   7 years freek.de.bruijn - Replaced magic 5's and some constants with value 5 by the new …
(edit) @1404   7 years david.vanenckevort * Attempt at handling spaces in the text.
(edit) @1403   7 years david.vanenckevort * Add method to search a for preferred label.
(edit) @1402   7 years david.vanenckevort * Fixed missing else
(edit) @1401   7 years david.vanenckevort * Support command line arguments on the ImportRunner? to specify the …
(edit) @1400   7 years freek.de.bruijn - Replaced magic 4's and some constants with value 4 by the new …
(edit) @1399   7 years kees.burger modified (most) header fields to comply to the new spec
(edit) @1398   7 years david.vanenckevort * Removed unused main method * Added @Override where missing
(edit) @1397   7 years kees.burger Drafr impl for deployment of #207
(edit) @1396   7 years freek.de.bruijn - SwissProtImporter?, SwissProtReader?, and SwissProtImporterUnitTest?: …
(edit) @1395   7 years freek.de.bruijn Fixed unit test UtilRunnerUnitTest?.testGenerateLinksets by commenting …
(edit) @1394   7 years freek.de.bruijn Fixed several Checkstyle issues.
(edit) @1393   7 years freek.de.bruijn Replaced magic 2's and some constants with value 2 by the new …
(edit) @1392   7 years eelkevanderhorst Changed source names.
(edit) @1391   7 years freek.de.bruijn Replaced magic 7's and some constants with value 7 by the new …
(edit) @1390   7 years eelkevanderhorst
(edit) @1389   7 years eelkevanderhorst Added basic VoID metadata.
(edit) @1388   7 years david.vanenckevort [maven-release-plugin] prepare for next development iteration
(edit) @1386   7 years david.vanenckevort [maven-release-plugin] prepare release 0.9.1
(edit) @1385   7 years david.vanenckevort * Fixed checkstyle issues.
(edit) @1383   7 years freek.de.bruijn Replaced magic 6's and some constants with value 6 by the new …
(edit) @1382   7 years david.vanenckevort * Fixed license header.
(edit) @1381   7 years eelkevanderhorst Created (ignored) tests for LinksetGenerator?
(edit) @1380   7 years eelkevanderhorst Refactored linkset generation functions out of UtilRunner? and into …
(edit) @1379   7 years freek.de.bruijn Fixed incorrect branch IDs. Now Pathway Ontology is 6 and Wiki …
Note: See TracRevisionLog for help on using the revision log.