Changeset 663

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Timestamp:
17-04-12 09:48:37 (2 years ago)
Author:
rob.hooft@…
Message:
  • Split long lines (checkstyle)
Location:
trunk/code/conceptwiki/imports
Files:
6 modified

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Unmodified
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Removed
  • trunk/code/conceptwiki/imports/imports-chemspider/src/main/java/nl/nbic/conceptwiki/imports/chemspider/ChemSpiderImportChembl.java

    r661 r663  
    136136             
    137137            // check whether there already is an entry for this chemspider id 
    138             final List<Concept> chemspiderConcepts = conceptService.getConceptsByNotation(String.valueOf(entry.csId), SCOPE.includeLabels(), 1, chemspiderBranch); 
     138            final List<Concept> chemspiderConcepts = conceptService.getConceptsByNotation( 
     139                            String.valueOf(entry.csId), SCOPE.includeLabels(), 1, chemspiderBranch); 
    139140            if (!chemspiderConcepts.isEmpty()) { 
    140141                final Concept chemspiderConcept = chemspiderConcepts.get(0); 
  • trunk/code/conceptwiki/imports/imports-chemspider/src/main/java/nl/nbic/conceptwiki/imports/chemspider/ChemSpiderImportDrugbank.java

    r661 r663  
    136136             
    137137            // check whether there already is an entry for this chemspider id 
    138             final List<Concept> chemspiderConcepts = conceptService.getConceptsByNotation(String.valueOf(entry.csId), SCOPE.includeLabels(), 1, chemspiderBranch); 
     138            final List<Concept> chemspiderConcepts = conceptService.getConceptsByNotation( 
     139                            String.valueOf(entry.csId), SCOPE.includeLabels(), 1, chemspiderBranch); 
    139140            if (!chemspiderConcepts.isEmpty()) { 
    140141                final Concept chemspiderConcept = chemspiderConcepts.get(0); 
  • trunk/code/conceptwiki/imports/imports-chemspider/src/main/java/nl/nbic/conceptwiki/imports/chemspider/ChemSpiderImport.java

    r661 r663  
    161161             
    162162            // check whether there already is an entry for this chemspider id 
    163             final List<Concept> chemspiderConcepts = conceptService.getConceptsByNotation(String.valueOf(entry.csId), SCOPE.includeLabels(), 1, chemspiderBranch); 
     163            final List<Concept> chemspiderConcepts = conceptService.getConceptsByNotation( 
     164                            String.valueOf(entry.csId), SCOPE.includeLabels(), 1, chemspiderBranch); 
    164165            if (!chemspiderConcepts.isEmpty()) { 
    165166                final Concept chemspiderConcept = chemspiderConcepts.get(0); 
  • trunk/code/conceptwiki/imports/imports-chemspider/src/main/java/nl/nbic/conceptwiki/imports/chemspider/ChemSpiderImportMesh_fixingTags.java

    r662 r663  
    254254                        final Set<Concept> toBeAddedTags = Sets.newHashSet(superUMLSConcept); 
    255255                         
    256                         final Changeset changeset = new ChangesetImpl().withRemove(new ActionImpl().withTags(toBeRemovedTags)).withAdd(new ActionImpl().withTags(toBeAddedTags)); 
     256                        final Changeset changeset = new ChangesetImpl().withRemove( 
     257                                        new ActionImpl().withTags(toBeRemovedTags)).withAdd( 
     258                                                        new ActionImpl().withTags(toBeAddedTags)); 
    257259                         
    258260                        final Transaction tx = graphTemplate.getGraphDb().beginTx(); 
     
    283285        final ApplicationContext ctx = new ClassPathXmlApplicationContext("/nl/nbic/conceptwiki/imports/import-chemspider-context.xml"); 
    284286         
    285         final ChemSpiderImportMesh_fixingTags chemSpiderImportMesh_fixingTags = (ChemSpiderImportMesh_fixingTags)ctx.getBean(ChemSpiderImportMesh_fixingTags.class); 
     287        final ChemSpiderImportMesh_fixingTags chemSpiderImportMesh_fixingTags = (ChemSpiderImportMesh_fixingTags)ctx.getBean( 
     288                                                                                        ChemSpiderImportMesh_fixingTags.class); 
    286289         
    287290        chemSpiderImportMesh_fixingTags.loadMeSHToMultipleCUIsMapping(); 
  • trunk/code/conceptwiki/imports/imports-chemspider/src/main/java/nl/nbic/conceptwiki/imports/chemspider/ChemSpiderImportPdb.java

    r661 r663  
    135135             
    136136            // check whether there already is an entry for this chemspider id 
    137             final List<Concept> chemspiderConcepts = conceptService.getConceptsByNotation(String.valueOf(entry.csId), SCOPE.includeLabels(), 1, chemspiderBranch); 
     137            final List<Concept> chemspiderConcepts = conceptService.getConceptsByNotation( 
     138                            String.valueOf(entry.csId), SCOPE.includeLabels(), 1, chemspiderBranch); 
    138139            if (!chemspiderConcepts.isEmpty()) { 
    139140                final Concept chemspiderConcept = chemspiderConcepts.get(0); 
  • trunk/code/conceptwiki/imports/imports-common/src/main/java/nl/nbic/conceptwiki/imports/common/ConceptWikiConsumer.java

    r646 r663  
    6666                    existingConcept = mappingService.mapConcept(receivedConcept); 
    6767                    if (existingConcept != null) { 
    68                         conceptService.updateConcept(receivedConcept.getUuid(), conceptUtility.getDiff(existingConcept, receivedConcept), getBranch().getId()); 
     68                        conceptService.updateConcept( 
     69                                        receivedConcept.getUuid(),  
     70                                        conceptUtility.getDiff(existingConcept, receivedConcept), getBranch().getId()); 
    6971                    } else { 
    7072                        conceptService.createConcept(receivedConcept, getBranch().getId());