Changeset 659

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Timestamp:
17-04-12 08:54:57 (2 years ago)
Author:
rob.hooft@…
Message:
  • Add spaces after , and ; (checkstyle)
Location:
trunk/code/conceptwiki/imports
Files:
5 modified

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Added
Removed
  • trunk/code/conceptwiki/imports/imports-chemspider/src/main/java/nl/nbic/conceptwiki/imports/chemspider/ChemSpiderImportMesh_fixingTags.java

    r657 r659  
    9797 
    9898     */ 
    99     private Map<String,List<String>> meshCUIsMapping = Maps.newHashMap(); 
    100      
    101      
    102     private Map<String,String> meshSuperCUIMapping = Maps.newHashMap(); 
     99    private Map<String, List<String>> meshCUIsMapping = Maps.newHashMap(); 
     100     
     101     
     102    private Map<String, String> meshSuperCUIMapping = Maps.newHashMap(); 
    103103     
    104104    private Set<String> superCUIs = Sets.newHashSet(); 
  • trunk/code/conceptwiki/imports/imports-chemspider/src/main/java/nl/nbic/conceptwiki/imports/chemspider/ChemSpiderImportMesh.java

    r658 r659  
    7979    private Concept chemicalTagConcept; 
    8080     
    81     private Map<String,List<Integer>> chemspiderMeshTagMapping = Maps.newHashMap(); 
     81    private Map<String, List<Integer>> chemspiderMeshTagMapping = Maps.newHashMap(); 
    8282     
    8383    public void bootstrap() throws Exception { 
     
    327327     
    328328    // tmp 
    329     Map<Integer,List<String>> dupIds = Maps.newHashMap(); 
     329    Map<Integer, List<String>> dupIds = Maps.newHashMap(); 
    330330    // end-tmp 
    331331     
  • trunk/code/conceptwiki/imports/imports-chemspider/src/main/java/nl/nbic/conceptwiki/imports/chemspider/ChemSpiderUpdateMeshTags.java

    r641 r659  
    7979    private Concept chemicalTagConcept; 
    8080     
    81     private Map<String,List<Integer>> chemspiderMeshTagMapping = Maps.newHashMap(); 
     81    private Map<String, List<Integer>> chemspiderMeshTagMapping = Maps.newHashMap(); 
    8282     
    8383    public void bootstrap() throws Exception { 
     
    356356     
    357357    // tmp 
    358     Map<Integer,List<String>> dupIds = Maps.newHashMap(); 
     358    Map<Integer, List<String>> dupIds = Maps.newHashMap(); 
    359359    // end-tmp 
    360360     
  • trunk/code/conceptwiki/imports/imports-swissprot/src/main/java/nl/nbic/conceptwiki/imports/swissprot/UniprotImport.java

    r654 r659  
    150150    private Map<String, Concept> genericProteinConcepts = Maps.newHashMap(); 
    151151    private Map<String, Concept> genericGeneConcepts = Maps.newHashMap(); 
    152     private Map<String,String> uniprot2ChemblMapping = Maps.newHashMap(); 
    153  
    154     private Map<String,String> drugbankTargetMapping = Maps.newHashMap(); 
    155     private Map<String,List<Url>> drugbankDrugMapping = Maps.newHashMap(); 
     152    private Map<String, String> uniprot2ChemblMapping = Maps.newHashMap(); 
     153 
     154    private Map<String, String> drugbankTargetMapping = Maps.newHashMap(); 
     155    private Map<String,i List<Url>> drugbankDrugMapping = Maps.newHashMap(); 
    156156 
    157157    public boolean bootstrap() throws IOException { 
     
    556556                createNewProteinConcept = true; 
    557557            } else { 
    558                 final List<Concept> concepts = conceptService.getConceptsByNotation(umlsId, QueryScopeImpl.FULL_SCOPE, 1, nlmBranchId);//getConceptsByNotation(umlsId, QueryScopeImpl.FULL_SCOPE, 10); 
     558                final List<Concept> concepts = conceptService.getConceptsByNotation(umlsId, QueryScopeImpl.FULL_SCOPE, 1, nlmBranchId); //getConceptsByNotation(umlsId, QueryScopeImpl.FULL_SCOPE, 10); 
    559559                if (concepts.size() == 1) { 
    560560                    // map to existing protein concept 
  • trunk/code/conceptwiki/imports/imports-umls/src/main/java/nl/nbic/conceptwiki/imports/umls/UMLSImport.java

    r657 r659  
    882882                final Concept tagConcept = getUMLSConcept(tagCUI); 
    883883                if (tagConcept == null) { 
    884                     LOGGER.error("tagConcept {} does not exist",tagCUI);                         
     884                    LOGGER.error("tagConcept {} does not exist", tagCUI);                         
    885885                    continue; 
    886886                } 
     
    929929                    final Concept classConcept = getUMLSConcept(cui1); 
    930930                    if (classConcept == null) { 
    931                         LOGGER.error("classConcept {} does not exist",cui1);                         
     931                        LOGGER.error("classConcept {} does not exist", cui1);                         
    932932                        continue; 
    933933                    } 
     
    938938                    final Concept memberConcept = getUMLSConcept(cui2); 
    939939                    if (memberConcept == null) { 
    940                         LOGGER.error("memberConcept {} does not exist",cui2); 
     940                        LOGGER.error("memberConcept {} does not exist", cui2); 
    941941                        continue; 
    942942                    }