Timeline


and

06-04-12:

22:39 Changeset [352] by tim.te.beek@…
Set title to null to hide it completely
13:17 Changeset [351] by tim.te.beek@…
Add labels to UI controls to illustrate how they are used
13:07 Changeset [350] by tim.te.beek@…
If attribute selection is empty, select all attributes so we can plot …
12:58 Changeset [349] by tim.te.beek@…
Add a better name renderer for Chart types
12:47 Changeset [348] by tim.te.beek@…
Create new dataset in background thread rather than on EDT Update test to …
12:13 Changeset [347] by tim.te.beek@…
Create a dropdownbox for chart type selection Create a new dataset each …

05-04-12:

23:50 Changeset [346] by tim.te.beek@…
Minor changes to TODO items
23:41 Changeset [345] by tim.te.beek@…
Add label to show the number of selected nodes Restrict height of network …
14:53 Changeset [344] by tim.te.beek@…
Add commented out code to load alternate charts: None seem worth the …
14:38 Changeset [343] by tim.te.beek@…
Update the plot title to the common prefix of selected attributes
13:53 Changeset [342] by tim.te.beek@…
When no nodes or edges are selected, select all nodes or edges Update test …
13:17 Changeset [341] by tim.te.beek@…
Add controls to toggle whether to plot node or edge attributes
12:36 Changeset [340] by tim.te.beek@…
Rework notification chain: PlottingParams? now only listens to changes in …

04-04-12:

21:40 Changeset [339] by tim.te.beek@…
Retain selected attributes when available attributes change
21:19 Changeset [338] by tim.te.beek@…
Update documentation & remove getter in AttributesModel?
21:10 Changeset [337] by tim.te.beek@…
Resolve the chain of update calls through PlottingParams? by introducing a …
17:51 Changeset [336] by tim.te.beek@…
Change NetworkComboBoxModel? to and ItemSelectable?
17:23 Changeset [335] by tim.te.beek@…
Do not retain any selected attributes when AttributeListModel? changes
17:12 Changeset [334] by tim.te.beek@…
Add a getter to plottingparams in PlotDialog? Add a launcher to quickly …
14:27 Changeset [333] by tim.te.beek@…
Create a new PlotDialog? for every invocation of the menu action Sort the …
13:20 Changeset [332] by tim.te.beek@…
Add a checkbox to toggle whether only expression attributes are displayed
12:44 Changeset [331] by tim.te.beek@…
Remove PlotUtils? Adapt JUnit test to work with PlottingParams?
12:18 Changeset [330] by tim.te.beek@…
Add a scrollpane around the attributes list
11:46 Changeset [329] by tim.te.beek@…
Make PlotDialog? the only plot action Sort nodes & attributes in UI …
10:06 Changeset [328] by tim.te.beek@…
Add lombok & maven shade plugin to pom.xml Add a new work in progress …

03-04-12:

17:05 Changeset [327] by tim.te.beek@…
Remove dependency on orson Return a SortedMap?<String, SortedMap?<String, …

02-04-12:

22:41 Changeset [326] by tim.te.beek@…
Add TODO to look into CategoryPlot? Handle errors when retrieving attribute …
22:00 Changeset [325] by tim.te.beek@…
Only run test when desktop is supported
21:31 Changeset [324] by tim.te.beek@…
Move test class Add TODO items
21:21 Changeset [323] by tim.te.beek@…
Don't add the window listener to the spawned JDialog Add zero when a node …
14:55 Changeset [322] by tim.te.beek@…
Add an initial version of showing a plot for selected nodes

28-03-12:

22:22 Changeset [321] by tim.te.beek@…
Move manual profile to root pom Add JFreeChart & Orson dependencies Add …
18:31 Changeset [320] by tim.te.beek@…
Rename PIQCPlugin to ExpressionDataViewerPlugin?
18:30 Changeset [319] by tim.te.beek@…
Rename packages to reflect new target
17:57 Changeset [318] by tim.te.beek@…
Rename module
17:55 Changeset [317] by tim.te.beek@…
Move piqc-plugin to expression-data-viewer
13:32 Changeset [316] by tim.te.beek@…
Update version number of alternative table import plugin
12:37 Changeset [315] by tim.te.beek@…
When a table file is selected, replace settings rather than merely setting …
12:25 Changeset [314] by tim.te.beek@…
Do not assign null or empty string attributes Check that attribute in last …
11:45 Changeset [313] by tim.te.beek@…
Make the helpset title match the names used in map & toc to fix help …
11:41 Changeset [312] by tim.te.beek@…
Disable grouping as requested by Pi. Lu.
11:11 Changeset [311] by tim.te.beek@…
Force US locale number format as per requests from Wageningen

27-03-12:

08:31 Changeset [310] by tim.te.beek@…
Increment version number to make the new plugin available in Wageningen

26-03-12:

21:58 Changeset [309] by tim.te.beek@…
Remove restriction on unique columns & getIndexForColumnName Move …
21:52 Changeset [308] by tim.te.beek@…
Merge InteractionAccessor? in with InteractionForwardingComboboxModel?
19:20 Changeset [307] by tim.te.beek@…
Use indices in interaction and attribute UI elements to pass selected …
17:29 Changeset [306] by tim.te.beek@…
Add a note about the true reason for the unique column names requirement
17:11 Changeset [305] by tim.te.beek@…
When guess datatypes is disabled: Remove all previously set …
16:06 Changeset [304] by tim.te.beek@…
Make logged messages slightly more informative
15:50 Changeset [303] by tim.te.beek@…
Also show logger dialog when loading previous settings and warnings occur …
15:06 Changeset [302] by tim.te.beek@…
Do not launch logger dialog from parseTableFile(), but from button or …
14:16 Changeset [301] by tim.te.beek@…
Do not load previous settings from Cytoscape config file is we can not …
13:46 Changeset [300] by tim.te.beek@…
Do not call fireSettingsChanged from setNetworkName, as it triggered …
12:19 Changeset [299] by tim.te.beek@…
Fix CI link Add issuemanagement
12:02 Changeset [298] by tim.te.beek@…
Fix table columns resizing to fit within inital width by: - disabling …
10:50 Changeset [297] by tim.te.beek@…
And anyUnseenDebug for completeness sake

23-03-12:

10:54 Changeset [296] by tim.te.beek@…
Use a selection model to pass selected columns rather than setting an …

22-03-12:

12:18 Changeset [295] by tim.te.beek@…
On exit: Store table import settings to a Cytoscape config file, and on …
12:17 Changeset [294] by tim.te.beek@…
Fix NPE in ButtonPanel? in determining if import button should be shown …
11:46 Changeset [293] by tim.te.beek@…
In CytoscapeAction?("Import network from table") reuse a single …
11:14 Changeset [292] by tim.te.beek@…
Manually generate safe getter & setter for selected columns Remove …

21-03-12:

18:15 Changeset [291] by tim.te.beek@…
Add the example network & target visualizations pdf
17:57 Changeset [290] by tim.te.beek@…
Also check that tableFile exists & is readable before enabling import …
16:46 Changeset [289] by tim.te.beek@…
Document how datatypes are guessed and that this option can be disabled
15:30 Changeset [288] by tim.te.beek@…
Add mode to select source/target nodes for selected edges
14:02 Changeset [287] by tim.te.beek@…
Extract a public static method to select Source/Target? nodes within a …
13:48 Changeset [286] by tim.te.beek@…
Move select action to a new file Open a session when launching cytoscape …
12:51 Changeset [285] by tim.te.beek@…
Add an editable networkName field
10:31 Changeset [284] by tim.te.beek@…
Make all the buttons in the bottom bar the same size Do not resize …
10:05 Changeset [283] by tim.te.beek@…
Define horizontal interaction checkbox sizes to fix display when incorrect …

15-03-12:

22:53 Changeset [282] by tim.te.beek@…
Group delimiters on a panel to indicate they are logically grouped …
17:36 Changeset [281] by tim.te.beek@…
Add a JMenu around JMenuItems
17:32 Changeset [280] by tim.te.beek@…
Default Scanner.next method skips over whitespace, breaking the path to …
17:20 Changeset [279] by tim.te.beek@…
Provide a version number for maven-project-info-reports-plugin
17:11 Changeset [278] by tim.te.beek@…
Remove canonical path rather than absolute path
17:02 Changeset [277] by tim.te.beek@…
Instead of getRowCount() use new local _rows.size()
16:58 Changeset [276] by tim.te.beek@…
Improve safety of parseTableFile() by now writing to fields directly but …
16:48 Changeset [275] by tim.te.beek@…
Fix node duplication when setting interpretation inside row parsing loop
15:58 Changeset [274] by tim.te.beek@…
Remove artificial restriction that Source, target and edge attributes can …
15:39 Changeset [273] by tim.te.beek@…
Convert InterpretationDialog? to a PopupMenu?
14:09 Changeset [272] by tim.te.beek@…
Use an image icon on the button
14:08 Changeset [271] by tim.te.beek@…
Provide help content

14-03-12:

22:18 Changeset [270] by tim.te.beek@…
Add button to launch help panel on specific page Add initial help pages …
21:50 Changeset [269] by tim.te.beek@…
Add a help button in the middle of the bottom button bar
21:18 Changeset [268] by tim.te.beek@…
Add "guessDataTypes":true, to saved profile now that we've added that …
17:22 Changeset [267] by tim.te.beek@…
Add option to guess datatypes by looking at first row, enabled by default …
16:54 Changeset [266] by tim.te.beek@…
Only warn about failure to instantiate column values when input was non …
16:22 Changeset [265] by tim.te.beek@…
Do not store app reference locally in test Add debug case to QLH switch …
16:18 Changeset [264] by tim.te.beek@…
Update Jackson version Organize imports
15:43 Changeset [263] by tim.te.beek@…
Remove import-via-rpc from trunk: No longer under active development. Code …
15:43 Changeset [262] by tim.te.beek@…
15:41 Changeset [261] by tim.te.beek@…
Remove superfluous findbugs exclude files Add a name and description for …
14:53 Changeset [260] by tim.te.beek@…
Add plugin specific cytoscape categories to properties Only add shade …
10:50 Changeset [259] by tim.te.beek@…
Remove empty packages
10:49 Changeset [258] by tim.te.beek@…
Move common pom stuff to cytoscape-plugin-parent pom
10:47 Changeset [257] by tim.te.beek@…
Remove table import code & resources from PIQC plugin
10:07 Changeset [256] by tim.te.beek@…
Add root pom

13-03-12:

17:30 Changeset [255] by tim.te.beek@…
Add a note that saving indices in profiles is likely to break as columns …
17:11 Changeset [254] by tim.te.beek@…
Remove select action as the focus is now on table import
17:09 Changeset [253] by tim.te.beek@…
Rename Plugin class
17:08 Changeset [252] by tim.te.beek@…
Remove empty dirs
17:07 Changeset [251] by tim.te.beek@…
Move packages around to reflect new plugin focus
17:03 Changeset [250] by tim.te.beek@…
17:03 Changeset [249] by tim.te.beek@…
16:57 Changeset [248] by tim.te.beek@…
Update paths & names to reflect new name: Alternative Table Import
16:35 Changeset [247] by tim.te.beek@…
Move branch to trunk, as the new plugin is in active development and will …
16:28 Changeset [246] by tim.te.beek@…
16:28 Changeset [245] by tim.te.beek@…
16:16 Changeset [244] by tim.te.beek@…
Rename edge interaction modes Add nodes to network before adding edge
14:37 Changeset [243] by tim.te.beek@…
Create a view when laying out network rather than using the null view

09-03-12:

16:15 Changeset [242] by tim.te.beek@…
Fix wrong edge interaction label
14:01 Changeset [241] by tim.te.beek@…
Push out a new 1.6 version
13:58 Changeset [240] by tim.te.beek@…
Fix static code analyses warnings
13:44 Changeset [239] by tim.te.beek@…
Add queryable log handler that allows us to check if any messages were …
12:50 Changeset [238] by tim.te.beek@…
Fix color of interactions not showing inside Cytoscape due to an alternate …
12:46 Changeset [237] by tim.te.beek@…
Fix NPE when column name rather than AlternateEdgeInteraction? field is …
12:41 Changeset [236] by tim.te.beek@…
Resize all panels to their maximum sizes Prevent dialog from being resized …
12:05 Changeset [235] by tim.te.beek@…
Create an EdgeInteractionForwardingComboboxModel? that adds the alternate …

08-03-12:

18:10 Changeset [234] by tim.te.beek@…
Refactor in the use of InteractionAccessors?
17:42 Changeset [233] by tim.te.beek@…
Remove attribute assignment from InterpretationDialog? now that we have …
17:15 Changeset [232] by tim.te.beek@…
Add up and down buttons to manipulate additional attributes

07-03-12:

16:30 Changeset [231] by tim.te.beek@…
Also refresh listmodel when table columns change No longer …
16:28 Changeset [230] by tim.te.beek@…
Also reset additional attributes when columns change Use fewer unique …
16:03 Changeset [229] by tim.te.beek@…
Consistently rename xyzIDAttr to xyzInteraction Consistently rename …
15:17 Changeset [228] by tim.te.beek@…
Add second button to remove attributes selected in JList
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