Peregrine SKOS CLI: test.ttl

File test.ttl, 10.5 KB (added by eelkevanderhorst@…, 6 years ago)

Example SKOS thesaurus

Line 
1@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
2@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
3@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
4@prefix dct: <http://purl.org/dc/terms/> .
5@prefix emco: <http://rdf.biosemantics.org/emco/> .
6@prefix emco15: <http://rdf.biosemantics.org/emco/v1.5/> .
7@prefix concepts: <http://rdf.biosemantics.org/emco/v1.5/concepts/> .
8@prefix prop: <http://rdf.biosemantics.org/emco/properties/> .
9@prefix datatype: <http://rdf.biosemantics.org/emco/datatypes/> .
10@prefix semtype: <http://rdf.biosemantics.org/emco/semtypes/> .
11@prefix vocab: <http://rdf.biosemantics.org/emco/v1.5/vocabularies/> .
12
13prop:prefLabel_CI rdfs:subPropertyOf skos:prefLabel .
14
15prop:prefLabel_NO rdfs:subPropertyOf skos:prefLabel .
16
17prop:prefLabel_CI_NO rdfs:subPropertyOf skos:prefLabel .
18
19prop:altLabel_CI rdfs:subPropertyOf skos:altLabel .
20
21prop:altLabel_NO rdfs:subPropertyOf skos:altLabel .
22
23prop:altLabel_CI_NO rdfs:subPropertyOf skos:altLabel .
24
25vocab:default rdfs:comment "ErasmusMC ontology file" ;
26        dct:title "Anni2_1_June2009" ;
27        a skos:ConceptScheme .
28
29vocab:MSH dct:title "MeSH" ;
30        a skos:ConceptScheme .
31
32vocab:SNOMEDCT dct:title "SNOMED Clinical Terms" ;
33        a skos:ConceptScheme .
34
35semtype:T47 skos:topConceptOf vocab:default ;
36        rdfs:label "Disease or Syndrome" ;
37        skos:definition "A condition which alters or interferes with a normal process, state, or activity of an organism.  It is usually characterized by the abnormal functioning of one or more of the host's systems, parts, or organs.  Included here is a complex of symptoms descriptive of a disorder." ;
38        a skos:Concept .
39
40concepts:C9187 skos:inScheme vocab:default ;
41        prop:altLabel_CI_NO "Coccidiosis"@es ;
42        prop:prefLabel_CI_NO "Coccidiosis" ;
43        skos:notation "C0009187"^^datatype:umls-notation-datatype ;
44        rdfs:label "Coccidiosis" ;
45        skos:definition "Protozoan infection found in animals and man. It is caused by several different genera of COCCIDIA." ;
46        skos:broader semtype:T47 ;
47        a skos:Concept ;
48        skos:inScheme vocab:MSH , vocab:SNOMEDCT .
49
50concepts:C24530 skos:inScheme vocab:default ;
51        prop:altLabel_CI_NO "Malaria NOS" , "Plasmodium Infections" , "Remittent Fever" , "Paludism" , "Plasmodiosis" , "Malarial fever" , "Malaria (disorder)" , "Marsh Fever" , "Malaria"@es ;
52        prop:prefLabel_CI "Malaria" ;
53        skos:notation "C0024530"^^datatype:umls-notation-datatype ;
54        rdfs:label "test" ;
55        skos:broader concepts:C9187 , semtype:T47 ;
56        a skos:Concept ;
57        skos:inScheme vocab:MSH , vocab:SNOMEDCT .
58
59concepts:C3031092 skos:inScheme vocab:default ;
60        prop:altLabel_NO "myelocytomatosis viral oncogene homolog (avian)" , "myelocytomatosis oncogene" , "Transcription factor p64" , "Myc proto-oncogene protein" , "v-myc myelocytomatosis viral oncogene homolog (avian)" , "Myc2" , "myc proto-oncogene protein" , "Transcription factor p-64" , "Myc-2" ;
61        skos:notation "120208"^^datatype:gd-notation-datatype , "3130"^^datatype:gd-notation-datatype , "31092"^^datatype:ho-notation-datatype , "NM"^^datatype:rq-notation-datatype , "17869"^^datatype:eg-notation-datatype , "24577"^^datatype:eg-notation-datatype , "4609"^^datatype:eg-notation-datatype , "3130"^^datatype:rgd-notation-datatype , "190080"^^datatype:om-notation-datatype , "7553"^^datatype:hg-notation-datatype , "P01106"^^datatype:sp-notation-datatype , "P01108"^^datatype:sp-notation-datatype , "P09416"^^datatype:sp-notation-datatype , "Q6WDF7"^^datatype:sp-notation-datatype , "Hs.202453"^^datatype:ug-notation-datatype , "97250"^^datatype:mgi-notation-datatype , "1368308"^^datatype:af-notation-datatype , "1424942"^^datatype:af-notation-datatype , "202431"^^datatype:af-notation-datatype , "239931"^^datatype:af-notation-datatype ;
62        rdfs:label "MYC" ;
63        skos:prefLabel "MYC" , "C-MYC" , "Myc" , "Niard" , "Nird" , "c-Myc" , "c-myc" , "Myc-II" ;
64        skos:broader semtype:T116 ;
65        a skos:Concept ;
66        skos:inScheme vocab:GENE , vocab:HOMOLOGENE .
67
68concepts:C3003921 skos:inScheme vocab:default ;
69        prop:altLabel_NO "v-myc myelocytomatosis viral oncogene homolog 1, lung carcinoma derived (avian)" , "oncogene lmyc" , "l-myc-1 proto-oncogene" , "Lmyc1" , "myc-related gene from lung cancer" , "Oncogene MYC, lung carcinoma-derived" , "l-myc protein" , "Lmyc-1" , "Mycl1" , "L-myc-1 proto-oncogene protein" , "v-myc myelocytomatosis viral oncogene homolog 1, lung carcinoma derived (avian) (mapped)" , "v-myc avian myelocytomatosis viral oncogene homolog 1, lung carcinoma derived" , "MYCL-1" , "Mycl-1" ;
70        prop:prefLabel_NO "MYCL1" ;
71        skos:notation "120706"^^datatype:gd-notation-datatype , "1588591"^^datatype:gd-notation-datatype , "3921"^^datatype:ho-notation-datatype , "NM"^^datatype:rq-notation-datatype , "16918"^^datatype:eg-notation-datatype , "298506"^^datatype:eg-notation-datatype , "4610"^^datatype:eg-notation-datatype , "1588591"^^datatype:rgd-notation-datatype , "164850"^^datatype:om-notation-datatype , "7555"^^datatype:hg-notation-datatype , "P10166"^^datatype:sp-notation-datatype , "P12524"^^datatype:sp-notation-datatype , "Q6TLI1"^^datatype:sp-notation-datatype , "Hs.437922"^^datatype:ug-notation-datatype , "96799"^^datatype:mgi-notation-datatype , "1422087"^^datatype:af-notation-datatype , "1422088"^^datatype:af-notation-datatype , "214058"^^datatype:af-notation-datatype ;
72        rdfs:label "MYCL1" ;
73        skos:prefLabel "LMYC" , "MYCL" , "MYCL" , "MYCL-I" , "Lmyc-I" , "Mycl-I" ;
74        skos:broader semtype:T116 ;
75        a skos:Concept ;
76        skos:inScheme vocab:GENE , vocab:HOMOLOGENE .
77
78concepts:C3003922 skos:inScheme vocab:default ;
79        prop:altLabel_NO "v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian) (mapped)" , "v-myc myelocytomatosis viral related oncogene, neuroblastoma derived" , "v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived" , "Nmyc-1" , "neuroblastoma-derived v-myc avian myelocytomatosis viral related oncogene" , "v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)" , "N-MYC PROTO-ONCOGENE PROTEIN" , "Nmyc1" , "neuroblastoma MYC oncogene" , "pp65/67" , "oncogene NMYC" , "Oncogene NMYC" , "N-myc proto-oncogene protein" ;
80        skos:notation "120527"^^datatype:gd-notation-datatype , "1584995"^^datatype:gd-notation-datatype , "3922"^^datatype:ho-notation-datatype , "NM"^^datatype:rq-notation-datatype , "18109"^^datatype:eg-notation-datatype , "298894"^^datatype:eg-notation-datatype , "4613"^^datatype:eg-notation-datatype , "1584995"^^datatype:rgd-notation-datatype , "164840"^^datatype:om-notation-datatype , "7559"^^datatype:hg-notation-datatype , "P03966"^^datatype:sp-notation-datatype , "Q53XS5"^^datatype:sp-notation-datatype , "Q63379"^^datatype:sp-notation-datatype , "Hs.25960"^^datatype:ug-notation-datatype , "97357"^^datatype:mgi-notation-datatype , "1417155"^^datatype:af-notation-datatype , "1425922"^^datatype:af-notation-datatype , "1425923"^^datatype:af-notation-datatype , "209756"^^datatype:af-notation-datatype , "209757"^^datatype:af-notation-datatype , "211377"^^datatype:af-notation-datatype , "234376"^^datatype:af-notation-datatype ;
81        rdfs:label "MYCN" ;
82        skos:prefLabel "MYCN" , "Mycn" , "N-myc" , "ODED" , "MODED" , "Nmyc" , "NMYC" , "Nmyc-I" ;
83        skos:broader semtype:T116 ;
84        a skos:Concept ;
85        skos:inScheme vocab:GENE , vocab:HOMOLOGENE .
86
87concepts:C3020128 skos:inScheme vocab:default ;
88        prop:altLabel_NO "neural cell adhesion molecule L1" , "NEURAL CELL ADHESION MOLECULE L1" , "Neural cell adhesion molecule L1" , "N-CAML1" , "L1cam" , "MIC5" , "antigen identified by monoclonal antibody R1" , "L1 cell adhesion molecule (hydrocephalus, stenosis of aqueduct of Sylvius 1, MASA (mental retardation, aphasia, shuffling gait and adducted thumbs) syndrome, spastic paraplegia 1)" , "CD171 antigen" , "HSAS1" , "S10" , "CAML1" , "NCAM-L1" , "MIC5" , "L1 cell adhesion molecule" , "SPG1" , "CD171" , "N-CAM L1" , "neural cell adhesion molecule L-I" , "neural cell adhesion molecule L-1" , "NEURAL CELL ADHESION MOLECULE L-I" , "NEURAL CELL ADHESION MOLECULE L-1" , "Neural cell adhesion molecule L-I" , "Neural cell adhesion molecule L-1" , "N-CAML-1" , "MIC-5" , "antigen identified by monoclonal antibody R-I" , "antigen identified by monoclonal antibody R-1" , "HSAS-1" , "CAML-1" , "NCAM-L-1" , "MIC-5" , "SPG-1" , "CD-171" , "N-CAM L-I" , "N-CAM L-1" ;
89        prop:prefLabel_NO "L1CAM" ;
90        skos:notation "120133"^^datatype:gd-notation-datatype , "120526"^^datatype:gd-notation-datatype , "619777"^^datatype:gd-notation-datatype , "20128"^^datatype:ho-notation-datatype , "NM"^^datatype:rq-notation-datatype , "16728"^^datatype:eg-notation-datatype , "3897"^^datatype:eg-notation-datatype , "50687"^^datatype:eg-notation-datatype , "619777"^^datatype:rgd-notation-datatype , "308840"^^datatype:om-notation-datatype , "6470"^^datatype:hg-notation-datatype , "P11627"^^datatype:sp-notation-datatype , "P32004"^^datatype:sp-notation-datatype , "Q05695"^^datatype:sp-notation-datatype , "Hs.522818"^^datatype:ug-notation-datatype , "96721"^^datatype:mgi-notation-datatype , "1369213"^^datatype:af-notation-datatype , "1421958"^^datatype:af-notation-datatype , "1450435"^^datatype:af-notation-datatype , "204584"^^datatype:af-notation-datatype , "204585"^^datatype:af-notation-datatype ;
91        rdfs:label "L1CAM" ;
92        skos:prefLabel "HSAS" , "MASA" , "N-CAML-I" , "MIC-V" , "HSAS-I" , "CAML-I" , "NCAM-L-I" , "MIC-V" , "SPG-I" ;
93        skos:broader semtype:T116 ;
94        a skos:Concept ;
95        skos:inScheme vocab:GENE , vocab:HOMOLOGENE .
96
97concepts:C3000168 skos:inScheme vocab:default ;
98        prop:altLabel_NO "CD54 antigen" , "intercellular adhesion molecule I" , "intercellular adhesion molecule1" , "Icam-1" , "CD-54" , "BB-2" , "Intercellular adhesion molecule I" , "Intercellular adhesion molecule1" , "Intercellular adhesion molecule-I" ;
99        prop:prefLabel_NO "ICAM-1" ;
100        skos:notation "120076"^^datatype:gd-notation-datatype , "2857"^^datatype:gd-notation-datatype , "168"^^datatype:ho-notation-datatype , "NM"^^datatype:rq-notation-datatype , "15894"^^datatype:eg-notation-datatype , "25464"^^datatype:eg-notation-datatype , "3383"^^datatype:eg-notation-datatype , "2857"^^datatype:rgd-notation-datatype , "147840"^^datatype:om-notation-datatype , "5344"^^datatype:hg-notation-datatype , "Q00238"^^datatype:sp-notation-datatype , "Q15463"^^datatype:sp-notation-datatype , "Hs.643447"^^datatype:ug-notation-datatype , "1387202"^^datatype:af-notation-datatype , "1424067"^^datatype:af-notation-datatype , "1427805"^^datatype:af-notation-datatype , "1427806"^^datatype:af-notation-datatype , "202637"^^datatype:af-notation-datatype , "202638"^^datatype:af-notation-datatype , "215485"^^datatype:af-notation-datatype ;
101        rdfs:label "ICAM1" ;
102        skos:prefLabel "ICAM-I" , "Icam-I" , "BB-II" ;
103        skos:broader semtype:T116 ;
104        a skos:Concept ;
105        skos:inScheme vocab:GENE , vocab:HOMOLOGENE .